Factsheet for PGSC0003DMT400008352

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g082430.1.1	Tomato	nucleus	91.31	89.52
Solyc08g068760.1.1	Tomato	cytosol	26.73	77.42
Bra022667.1-P	Field mustard	nucleus	23.39	30.26
CDY28823	Canola	nucleus	23.39	30.26
CDY51791	Canola	nucleus	21.38	29.36
AT5G53660.1	Thale cress	nucleus	23.61	29.04
PGSC0003DMT400009997	Potato	nucleus	7.57	27.87
KRH64328	Soybean	nucleus	34.08	25.8
KRH53600	Soybean	nucleus	32.29	25.09
PGSC0003DMT400075563	Potato	nucleus	19.15	24.57
PGSC0003DMT400047580	Potato	nucleus	18.04	22.95
PGSC0003DMT400079338	Potato	nucleus	15.59	22.01
PGSC0003DMT400072628	Potato	nucleus	18.93	21.74
PGSC0003DMT400031893	Potato	nucleus	19.38	20.62
VIT_16s0098g01080.t01	Wine grape	nucleus	25.17	19.62
PGSC0003DMT400055151	Potato	nucleus	25.84	19.37
PGSC0003DMT400033847	Potato	nucleus	11.58	19.26
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	24.72	18.59
PGSC0003DMT400033246	Potato	nucleus	16.7	17.86

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:M0ZUG2	PFAM:PF08879	PFAM:PF08880
EnsemblPlantsGene:PGSC0003DMG400003220	PGSC:PGSC0003DMG400003220	EnsemblPlants:PGSC0003DMT400008352	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF24	SMART:SM00951	UniParc:UPI000295BFE4	InterPro:WRC_dom	SEG:seg	:

Description

AtGRF7 [Source:PGSC_GENE;Acc:PGSC0003DMG400003220]

Coordinates

chr3:-:47583557..47586150

Molecular Weight (calculated)

49390.5 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.564

Length

449 amino acids

Sequence
(BLAST)

001: MPFFSDEASL LPPAPSAAVV RSLQPFDVAT NSQGGMATAL GYPFTWAQWK ELERQAMIYK YMVSAISVPP DLLLSICSGA SHTTSATGSV QGKRHTTNIR
101: DLEPGRCKRT DGKKWRCSRD VAPHQKYCER HMHRGRPRSR KHVEVHAGVS NASDNKKTRL QVESTTMAVT IPTTPASQIN NRSTKQPLRS TFQQIQSPLF
201: FHDDKIGGNG NISTDPSYNE LHRTSGWMME GELVAKADSG QQWQHLMDSN AGYSAHGYRE EALNFLASRD MERTEHTGEF NFMTNPEFVK DVSKDSINGW
301: SNDNVYNNSN NENMEALLWP SLGNISPSSL TLSIAMAAGD VLDEDMGLDS RFMNTNQHKF WENSFPFASG GPLAEVLHPS SSFSLGDNPT SSYTSNGDSI
401: SPAATTVSSP SGVLQKTVFS HSDGSVCNSP ILAAPSNITP ETVQFQWLR

Best Arabidopsis Sequence Match ( AT5G53660.1 )
(BLAST)

001: MDFLKVSDKT TIPYRSDSLF SLNQQQYKES SFGFRDMEIH PHPTPYAGNG LLGCYYYYPF TNAQLKELER QAMIYKYMIA SIPVPFDLLV SSPSSASPCN
101: NKNIAGDLEP GRCRRTDGKK WRCAKEVVSN HKYCEKHLHR GRPRSRKHVE PPYSRPNNNG GSVKNRDLKK LPQKLSSSSI KDKTLEPMEV SSSISNYRDS
201: RGSEKFTVLA TTEQENKYLN FIDVWSDGVR SSEKQSTTST PVSSSNGNLS LYSLDLSMGG NNLMGQDEMG LIQMGLGVIG SGSEDHHGYG PYGVTSSLEE
301: MSSWLAPMST TPGGPLAEIL RPSTNLAISG DIESYSLMET PTPSSSPSRV MKKMTSSVSD ESSQV

Arabidopsis Description

GRF7Growth-regulating factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJB8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.