Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002573 | |
| PGSC0003DMT400065405 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13960.1 | PGSC0003DMT400002573 | AT5G28640.1 | 15960617 |
| AT3G13960.1 | PGSC0003DMT400065405 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009997 | Potato | nucleus | 14.44 | 31.97 |
| VIT_09s0002g01350.t01 | Wine grape | nucleus | 42.59 | 31.68 |
| VIT_11s0016g01250.t01 | Wine grape | nucleus | 44.07 | 30.75 |
| KRH47599 | Soybean | nucleus | 37.41 | 29.28 |
| PGSC0003DMT400079338 | Potato | nucleus | 33.7 | 28.62 |
| KRH06183 | Soybean | nucleus | 37.78 | 28.33 |
| PGSC0003DMT400075563 | Potato | nucleus | 34.81 | 26.86 |
| PGSC0003DMT400047580 | Potato | nucleus | 34.44 | 26.35 |
| Os06t0204800-00 | Rice | nucleus | 27.04 | 24.25 |
| Os02t0776900-01 | Rice | mitochondrion, nucleus | 35.19 | 23.93 |
| GSMUA_Achr8P30640_001 | Banana | nucleus | 28.15 | 23.75 |
| KXG31209 | Sorghum | mitochondrion, nucleus | 33.7 | 22.98 |
| GSMUA_Achr7P02330_001 | Banana | nucleus | 29.26 | 22.97 |
| Zm00001d018260_P001 | Maize | mitochondrion | 31.85 | 22.87 |
| HORVU6Hr1G081210.1 | Barley | nucleus | 34.81 | 22.76 |
| TraesCS6A01G335900.1 | Wheat | nucleus | 34.44 | 22.74 |
| TraesCS6D01G315700.1 | Wheat | nucleus | 34.81 | 22.71 |
| HORVU7Hr1G034610.4 | Barley | mitochondrion | 26.3 | 22.68 |
| TraesCS6B01G366700.1 | Wheat | nucleus | 34.44 | 22.68 |
| CDX71979 | Canola | nucleus | 31.85 | 22.34 |
| TraesCS7A01G165600.1 | Wheat | nucleus | 25.19 | 22.01 |
| CDX97531 | Canola | nucleus | 31.48 | 21.91 |
| CDY55209 | Canola | nucleus | 31.48 | 21.79 |
| AT3G13960.1 | Thale cress | nucleus | 31.85 | 21.66 |
| CDX75742 | Canola | nucleus | 29.26 | 21.64 |
| TraesCS7B01G070200.1 | Wheat | nucleus | 25.19 | 21.52 |
| Bra027384.1-P | Field mustard | nucleus | 31.11 | 21.48 |
| Zm00001d052112_P001 | Maize | mitochondrion, nucleus | 31.85 | 21.45 |
| Bra021521.1-P | Field mustard | cytosol | 32.59 | 21.41 |
| GSMUA_Achr1P21940_001 | Banana | nucleus | 30.0 | 21.37 |
| CDY39081 | Canola | nucleus | 31.48 | 21.36 |
| OQU76020 | Sorghum | mitochondrion, nucleus | 26.67 | 21.3 |
| TraesCS7D01G166400.1 | Wheat | nucleus | 25.19 | 21.25 |
| Bra001532.1-P | Field mustard | nucleus | 28.52 | 21.21 |
| CDX82503 | Canola | nucleus | 28.52 | 21.04 |
| Zm00001d037117_P001 | Maize | mitochondrion, nucleus | 25.93 | 19.02 |
| Zm00001d000238_P001 | Maize | nucleus | 26.67 | 18.37 |
| PGSC0003DMT400033246 | Potato | nucleus | 22.22 | 14.29 |
| PGSC0003DMT400072628 | Potato | nucleus | 20.37 | 14.07 |
| PGSC0003DMT400012666 | Potato | mitochondrion, nucleus | 26.67 | 12.06 |
| PGSC0003DMT400055151 | Potato | nucleus | 25.93 | 11.69 |
| PGSC0003DMT400008352 | Potato | nucleus | 19.26 | 11.58 |
| PGSC0003DMT400031893 | Potato | nucleus | 17.04 | 10.9 |
Protein Annotations
| MapMan:15.5.52.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 |
| InterPro:GRF | InterPro:IPR014977 | UniProt:M1AZS8 | PFAM:PF08879 | EnsemblPlantsGene:PGSC0003DMG400013004 | PGSC:PGSC0003DMG400013004 |
| EnsemblPlants:PGSC0003DMT400033847 | PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF4 | UniParc:UPI0002963D77 | InterPro:WRC_dom |
| SEG:seg | : | : | : | : | : |
Description
Growth-regulating factor 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400013004]
Coordinates
chr7:-:38400818..38402198
Molecular Weight (calculated)
30946.7 Da
IEP (calculated)
8.676
GRAVY (calculated)
-1.134
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV EIMTTNNTSS STTTRPPTAI PISSINKNTN TCSPTSFSYL TSSSSSTHEP
101: HHNYPFLYRP PQDHTPKFLF ESPPAYSRNG MKEEVGEHVF FSEASGTMTS TCGSNSLESD TWQLSPLTMS SSPMKQRTTY SPSQSTAHSY LQLQNLNESS
201: RQNYYYHNDV EKEDHQPKKV MHHFFDEWPP KDNKHSWLDS DDKFSGLSKT QLSISIPNPS QDLFITTNEK
101: HHNYPFLYRP PQDHTPKFLF ESPPAYSRNG MKEEVGEHVF FSEASGTMTS TCGSNSLESD TWQLSPLTMS SSPMKQRTTY SPSQSTAHSY LQLQNLNESS
201: RQNYYYHNDV EKEDHQPKKV MHHFFDEWPP KDNKHSWLDS DDKFSGLSKT QLSISIPNPS QDLFITTNEK
001: MGMGRKIDAE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGKNRSSSRK PPPTQFTPNL FLDSSSRRRR SGYMDDFFSI EPSGSIKSCS GSAMEDNDDG
101: SCRGINNEEK QPDRHCFILG TDLRTRERPL MLEEKLKQRD HDNEEEQGSK RFYRFLDEWP SSKSSVSTSL FI
101: SCRGINNEEK QPDRHCFILG TDLRTRERPL MLEEKLKQRD HDNEEEQGSK RFYRFLDEWP SSKSSVSTSL FI
Arabidopsis Description
AtGRF6growth-regulating factor 6 [Source:TAIR;Acc:AT2G06200]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.