Factsheet for PGSC0003DMT400079338

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g075950.1.1	Tomato	nucleus	98.11	86.43
PGSC0003DMT400075563	Potato	nucleus	77.67	70.57
PGSC0003DMT400047580	Potato	nucleus	77.36	69.69
VIT_16s0039g01450.t01	Wine grape	nucleus	55.97	55.97
KRH27682	Soybean	nucleus	49.37	50.97
GSMUA_Achr10P...	Banana	nucleus	52.83	49.85
KRH77798	Soybean	nucleus	48.74	48.74
KRH23984	Soybean	nucleus	48.11	45.95
GSMUA_Achr1P23840_001	Banana	nucleus	51.26	45.4
KRH29333	Soybean	nucleus	48.43	45.16
GSMUA_Achr2P04650_001	Banana	extracellular	52.52	38.75
GSMUA_AchrUn_...	Banana	nucleus	48.74	37.71
PGSC0003DMT400033847	Potato	nucleus	28.62	33.7
PGSC0003DMT400009997	Potato	nucleus	12.26	31.97
PGSC0003DMT400033246	Potato	nucleus	26.1	19.76
PGSC0003DMT400072628	Potato	nucleus	22.64	18.41
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	31.13	16.58
PGSC0003DMT400008352	Potato	nucleus	22.01	15.59
PGSC0003DMT400055151	Potato	nucleus	27.67	14.69
PGSC0003DMT400031893	Potato	nucleus	17.92	13.51

Protein Annotations

EntrezGene:102584254	MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:M1D1M9	PFAM:PF08879
PFAM:PF08880	EnsemblPlantsGene:PGSC0003DMG400030881	PGSC:PGSC0003DMG400030881	EnsemblPlants:PGSC0003DMT400079338	PFscan:PS51666	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF8	UniParc:UPI000294A8C9	InterPro:WRC_dom	RefSeq:XP_006364478.1	SEG:seg

Description

Growth-regulating factor 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400030881]

Coordinates

chr8:-:48345379..48349212

Molecular Weight (calculated)

35403.0 Da

IEP (calculated)

8.556

GRAVY (calculated)

-0.778

Length

318 amino acids

Sequence
(BLAST)

001: MIYKYLVAGL PVPPDLVVPI RRSFEAISAR FFHHPSLGYC SYYGKKFDPE PGRCRRTDGK KWRCSKDAYP DSKYCERHMH RGRNRSRKPV ESQSTSQSLS
101: TSMSQITTGS SNTRGSFQNS SSGSFQNMPL YSVANSGNYG STATKLQMEP VSYGIDNKDY RYLHGITPDA DEHNLSSEAS ATVRSLGMGT NTDSTWVLPS
201: QVSSSPMARS KNDSQLLGSS TEMHLPNLLE PMIDATISKR RHQHCFFGSD IDSPGTVKEE QHSMRPFFNE WPTAKESWSN LDDEGSNKNN FSTTQLSISI
301: PIAPSNFSSR SACSPNDT

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.