CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29333	Soybean	nucleus	91.89	89.74
KRH27682	Soybean	nucleus	69.37	75.0
KRH77798	Soybean	nucleus	70.87	74.21
VIT_16s0039g01450.t01	Wine grape	nucleus	69.67	72.96
GSMUA_Achr10P...	Banana	nucleus	51.65	51.04
PGSC0003DMT400047580	Potato	nucleus	51.95	49.01
Solyc08g005430.2.1	Tomato	nucleus	51.95	48.6
GSMUA_Achr1P23840_001	Banana	nucleus	51.95	48.19
PGSC0003DMT400079338	Potato	nucleus	45.95	48.11
Solyc12g096070.1.1	Tomato	nucleus	48.95	47.25
Solyc08g075950.1.1	Tomato	nucleus	50.75	46.81
PGSC0003DMT400075563	Potato	nucleus	48.95	46.57
GSMUA_Achr2P04650_001	Banana	extracellular	54.35	42.0
GSMUA_AchrUn_...	Banana	nucleus	51.35	41.61
KRH37478	Soybean	nucleus	39.34	35.89
KRH47599	Soybean	nucleus	36.94	35.65
KRH12524	Soybean	nucleus	39.04	35.62
KRH06183	Soybean	nucleus	36.64	33.89
KRH19281	Soybean	nucleus	39.04	33.85
KRH02627	Soybean	nucleus	38.14	33.69
KRH30830	Soybean	nucleus	29.43	29.25
KRH32671	Soybean	nucleus	28.23	27.98
KRH76368	Soybean	nucleus	27.93	27.76
KRH39656	Soybean	nucleus, plastid	27.33	27.0
KRH67865	Soybean	nucleus	29.43	25.52
KRG96154	Soybean	nucleus	28.83	24.74
KRG88739	Soybean	nucleus	33.63	18.86
KRH05542	Soybean	nucleus	33.33	18.5
KRG88736	Soybean	nucleus	32.43	18.03
KRH05543	Soybean	nucleus	32.43	17.73
KRH76298	Soybean	nucleus	24.02	17.47
KRH64328	Soybean	nucleus	30.03	16.86
KRH53600	Soybean	nucleus	29.13	16.78
KRH65240	Soybean	nucleus	23.12	16.45

Protein Annotations

EntrezGene:100787226	MapMan:15.5.52.1	EMBL:ACUP02007164	EnsemblPlantsGene:GLYMA_12G014700	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	UniProt:I1LP39	InterPro:IPR014977
InterPro:IPR014978	EnsemblPlants:KRH23984	ProteinID:KRH23984	ProteinID:KRH23984.1	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF8	SMART:SM00951	UniParc:UPI00023CBA36
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:1066245..1070088

Molecular Weight (calculated)

36917.6 Da

IEP (calculated)

6.837

GRAVY (calculated)

-0.741

Length

333 amino acids

Sequence
(BLAST)

001: MNISGGGGTV MGFSSNGRSP FTVSQWQELE HQALIFKYMV AGLPVPPDLV LPIQKSFDST LSHAFFHHPT LSYCSFYGKK VDPEPGRCRR TDGKKWRCSK
101: EAYPDSKYCE RHMHRGRNRS RKPVESQTMT HSSSTVTSLT VTGGGDSNGT VNFQNLPTNA FGNLQGTDSG TDRTNYHLDS IPYAIPSKEY RCLQGLKSEG
201: GEHCFFSEAS GSNKVLQMES QLENTWPSMS TRVASFSTSK SSTDSLLHSD YPQHSFLSGE YASGEHVKEE GQPLRPFSNE WPKSRESWSG LEDDISNQTA
301: FSTTQLSISI PMSSDFSATS SQSPHGENEI QFR

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.