Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52910.1 | KRG92707 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | KRG97010 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | KRH34114 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | KRH68767 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG96154 | Soybean | nucleus | 92.19 | 91.24 |
| KRH30830 | Soybean | nucleus | 55.99 | 64.18 |
| KRH32671 | Soybean | nucleus | 55.47 | 63.39 |
| VIT_08s0007g03760.t01 | Wine grape | nucleus | 63.54 | 58.94 |
| CDX79674 | Canola | nucleus | 51.56 | 53.8 |
| CDX84560 | Canola | nucleus | 51.04 | 53.26 |
| Bra023066.1-P | Field mustard | nucleus | 50.78 | 52.99 |
| CDY43721 | Canola | nucleus | 48.96 | 52.96 |
| Solyc09g009200.1.1 | Tomato | nucleus | 52.34 | 52.76 |
| Bra017240.1-P | Field mustard | nucleus | 49.48 | 52.49 |
| AT2G36400.1 | Thale cress | nucleus | 54.17 | 52.26 |
| Solyc10g083510.1.1 | Tomato | nucleus | 52.86 | 52.19 |
| Bra005268.1-P | Field mustard | nucleus | 52.34 | 51.8 |
| CDX75039 | Canola | nucleus | 51.82 | 51.69 |
| PGSC0003DMT400072628 | Potato | nucleus | 52.34 | 51.41 |
| AT3G52910.1 | Thale cress | nucleus | 50.52 | 51.05 |
| CDX84126 | Canola | nucleus | 52.08 | 51.02 |
| CDX67545 | Canola | nucleus | 48.18 | 50.82 |
| Bra028541.1-P | Field mustard | nucleus | 48.44 | 50.82 |
| CDY13333 | Canola | nucleus | 47.66 | 50.0 |
| CDX78132 | Canola | nucleus | 48.7 | 49.6 |
| CDX73595 | Canola | nucleus | 48.7 | 49.08 |
| Bra006956.1-P | Field mustard | nucleus | 48.18 | 48.43 |
| GSMUA_Achr3P22790_001 | Banana | nucleus | 48.7 | 47.7 |
| GSMUA_Achr8P07650_001 | Banana | extracellular | 37.24 | 45.25 |
| CDX76249 | Canola | nucleus | 47.4 | 44.5 |
| Bra019640.1-P | Field mustard | nucleus | 46.88 | 33.46 |
| CDY66284 | Canola | nucleus | 46.35 | 33.09 |
| KRH27682 | Soybean | nucleus | 23.96 | 29.87 |
| KRH23984 | Soybean | nucleus | 25.52 | 29.43 |
| KRH77798 | Soybean | nucleus | 23.96 | 28.93 |
| KRH29333 | Soybean | nucleus | 25.52 | 28.74 |
| KRH47599 | Soybean | nucleus | 22.66 | 25.22 |
| KRH06183 | Soybean | nucleus | 22.66 | 24.17 |
| KRH19281 | Soybean | nucleus | 23.96 | 23.96 |
| KRH12524 | Soybean | nucleus | 22.4 | 23.56 |
| KRH02627 | Soybean | nucleus | 22.92 | 23.34 |
| KRH37478 | Soybean | nucleus | 22.14 | 23.29 |
| KRH76368 | Soybean | nucleus | 20.05 | 22.99 |
| KRH39656 | Soybean | nucleus, plastid | 19.53 | 22.26 |
| KRH05542 | Soybean | nucleus | 34.38 | 22.0 |
| KRG88739 | Soybean | nucleus | 33.85 | 21.89 |
| KRH05543 | Soybean | nucleus | 33.59 | 21.18 |
| KRG88736 | Soybean | nucleus | 32.81 | 21.04 |
| KRH53600 | Soybean | nucleus | 30.47 | 20.24 |
| KRH64328 | Soybean | nucleus | 30.47 | 19.73 |
| KRH76298 | Soybean | nucleus | 19.53 | 16.38 |
| KRH65240 | Soybean | nucleus | 18.75 | 15.38 |
Protein Annotations
| EntrezGene:100816436 | MapMan:15.5.52.1 | UniProt:A0A0R0KRR1 | EMBL:ACUP02002085 | EnsemblPlantsGene:GLYMA_03G192200 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 |
| InterPro:IPR014978 | ProteinID:KRH67864.1 | EnsemblPlants:KRH67865 | ProteinID:KRH67865 | ProteinID:KRH67865.1 | PFAM:PF08879 |
| PFAM:PF08880 | PFscan:PS51666 | PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF12 | SMART:SM00951 |
| UniParc:UPI000189D963 | InterPro:WRC_dom | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:40317192..40320935
Molecular Weight (calculated)
41816.7 Da
IEP (calculated)
7.501
GRAVY (calculated)
-0.667
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFHLKQWRN QHESEEQHST KMPKLLPESH QQQQPSASAL PLFVPEPNSS KVSTLSDSTL ASATMTSTTT NRLFPRMGSY FSLSQWQELE LQALIFRYML
101: AGAAVPPELL QPIKKSLLHS PHYYLHHPLQ HYQPSALLQS GYWGRGAMDP EPGRCRRTDG KKWRCSRDVV AGQKYCERHM HRGRNRSRKP VELPTPTSAI
201: NNCGVTGVGS LGPGASSSSI CSPPLASASF KSPFDLHLDE RSSGTKNEDE DHVGGDGRSG GGGGHMLRHF FDDWPRSLQD SDNVENNAAA GRSLSISMPG
301: ASSDVSLKLS TGYGEDSGPG NENVSLEPEQ LQLNWAGGWA SSNQVASMGG PLAEALRSST STSSPTSVLH RHLPRGSETS FIST
101: AGAAVPPELL QPIKKSLLHS PHYYLHHPLQ HYQPSALLQS GYWGRGAMDP EPGRCRRTDG KKWRCSRDVV AGQKYCERHM HRGRNRSRKP VELPTPTSAI
201: NNCGVTGVGS LGPGASSSSI CSPPLASASF KSPFDLHLDE RSSGTKNEDE DHVGGDGRSG GGGGHMLRHF FDDWPRSLQD SDNVENNAAA GRSLSISMPG
301: ASSDVSLKLS TGYGEDSGPG NENVSLEPEQ LQLNWAGGWA SSNQVASMGG PLAEALRSST STSSPTSVLH RHLPRGSETS FIST
001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
Arabidopsis Description
GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.