Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005268.1-P | Field mustard | nucleus | 95.41 | 96.39 |
| CDX75039 | Canola | nucleus | 94.39 | 96.1 |
| CDY43721 | Canola | nucleus | 78.83 | 87.04 |
| CDX79674 | Canola | nucleus | 81.38 | 86.68 |
| CDX84560 | Canola | nucleus | 80.87 | 86.14 |
| AT2G36400.1 | Thale cress | nucleus | 86.22 | 84.92 |
| CDX67545 | Canola | nucleus | 63.27 | 68.13 |
| CDX78132 | Canola | nucleus | 64.8 | 67.37 |
| CDY13333 | Canola | nucleus | 62.76 | 67.21 |
| CDX73595 | Canola | nucleus | 64.8 | 66.67 |
| CDX76249 | Canola | nucleus | 60.97 | 58.44 |
| KRH30830 | Soybean | nucleus | 45.15 | 52.84 |
| KRH67865 | Soybean | nucleus | 51.02 | 52.08 |
| KRG96154 | Soybean | nucleus | 51.28 | 51.8 |
| KRH32671 | Soybean | nucleus | 44.39 | 51.79 |
| Solyc09g009200.1.1 | Tomato | nucleus | 46.43 | 47.77 |
| VIT_08s0007g03760.t01 | Wine grape | nucleus | 49.23 | 46.62 |
| Solyc10g083510.1.1 | Tomato | nucleus | 45.41 | 45.76 |
| PGSC0003DMT400072628 | Potato | nucleus | 44.64 | 44.76 |
| CDY66284 | Canola | nucleus | 61.22 | 44.61 |
| GSMUA_Achr3P22790_001 | Banana | nucleus | 42.35 | 42.35 |
| GSMUA_Achr8P07650_001 | Banana | extracellular | 32.65 | 40.51 |
| CDY55116 | Canola | nucleus | 22.7 | 31.56 |
| CDY51791 | Canola | nucleus | 25.51 | 30.58 |
| CDY28823 | Canola | nucleus | 25.51 | 28.82 |
| CDY66422 | Canola | nucleus | 22.96 | 28.75 |
| CDY70432 | Canola | nucleus | 16.84 | 27.16 |
| CDY29584 | Canola | nucleus | 25.0 | 24.02 |
| CDX83200 | Canola | nucleus | 23.72 | 23.6 |
| CDX75672 | Canola | nucleus | 26.28 | 22.84 |
| CDX72654 | Canola | nucleus | 25.51 | 22.62 |
| CDX69322 | Canola | nucleus | 26.53 | 22.56 |
| CDY72447 | Canola | nucleus, plastid | 19.64 | 22.38 |
| CDX82503 | Canola | nucleus | 20.66 | 22.13 |
| CDY03485 | Canola | nucleus | 19.64 | 22.13 |
| CDX75742 | Canola | nucleus | 20.15 | 21.64 |
| CDX97531 | Canola | nucleus | 21.17 | 21.39 |
| CDY55209 | Canola | nucleus | 21.17 | 21.28 |
| CDY39081 | Canola | nucleus | 21.17 | 20.85 |
| CDX71979 | Canola | nucleus | 20.41 | 20.78 |
| CDY10989 | Canola | nucleus | 19.9 | 20.74 |
| CDX92617 | Canola | nucleus | 21.43 | 20.64 |
| CDY33407 | Canola | nucleus | 19.9 | 19.5 |
| CDY37044 | Canola | nucleus | 21.17 | 18.99 |
| CDY27382 | Canola | nucleus | 21.17 | 18.69 |
| CDY21475 | Canola | nucleus | 22.19 | 17.5 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.26 | 0.59 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078D442 | EnsemblPlants:CDX84126 | ProteinID:CDX84126 | ProteinID:CDX84126.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00141134001 | InterPro:Gln-Leu-Gln_QLQ |
| InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 | PFscan:PS51667 |
| PANTHER:PTHR31602 | PANTHER:PTHR31602:SF39 | SMART:SM00951 | UniParc:UPI0004EEB686 | InterPro:WRC_dom | SEG:seg |
Description
BnaC04g08880D
Coordinates
chrLK031836:+:47592..50247
Molecular Weight (calculated)
43032.7 Da
IEP (calculated)
8.019
GRAVY (calculated)
-0.738
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLQLKQWRS QQQQQQQTES EDQPSAAKIP KHVFDQIQSQ TATSTALPLF SPEPTASKLS SLSQDSSSRF PKIGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYMGK GAMDPEPGRC RRTDGKKWRC SRDAFPGHKY CERHMHRGRN RSRKPVETPT VNATTSTPIA
201: PASAPAATTS LFAFGGGEEV GQGGGSSCFF FSGSGSGSSN SSSELLHLSQ SSELRQGSNN SNNKRPYESH NGFGNNISEG GHTLRHFFDD WPRSEADNSS
301: TPMSSTTCLS ISMPVNSSSD VSLKLSTGNE EEEARSNNNG RDQQNMSWWS GGVSLPNHHH MGGPLAEALR SSSSSSPTSV LHQLGVSTQA FH
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYMGK GAMDPEPGRC RRTDGKKWRC SRDAFPGHKY CERHMHRGRN RSRKPVETPT VNATTSTPIA
201: PASAPAATTS LFAFGGGEEV GQGGGSSCFF FSGSGSGSSN SSSELLHLSQ SSELRQGSNN SNNKRPYESH NGFGNNISEG GHTLRHFFDD WPRSEADNSS
301: TPMSSTTCLS ISMPVNSSSD VSLKLSTGNE EEEARSNNNG RDQQNMSWWS GGVSLPNHHH MGGPLAEALR SSSSSSPTSV LHQLGVSTQA FH
001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH
Arabidopsis Description
GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.