Factsheet for VIT_08s0007g03760.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g02950.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52910.1	VIT_07s0005g02950.t01	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67865	Soybean	nucleus	58.94	63.54
KRG96154	Soybean	nucleus	58.7	62.63
Solyc10g083510.1.1	Tomato	nucleus	52.17	55.53
PGSC0003DMT400072628	Potato	nucleus	51.45	54.48
Solyc09g009200.1.1	Tomato	nucleus	50.0	54.33
CDX84560	Canola	nucleus	46.38	52.17
Bra023066.1-P	Field mustard	nucleus	46.38	52.17
CDX79674	Canola	nucleus	46.38	52.17
AT2G36400.1	Thale cress	nucleus	49.76	51.76
CDX78132	Canola	nucleus	46.62	51.19
CDX73595	Canola	nucleus	46.86	50.92
CDX67545	Canola	nucleus	44.44	50.55
CDY43721	Canola	nucleus	43.24	50.42
CDX75039	Canola	nucleus	46.86	50.39
Bra028541.1-P	Field mustard	nucleus	44.44	50.27
Bra006956.1-P	Field mustard	nucleus	46.14	50.0
Bra005268.1-P	Field mustard	nucleus	46.86	50.0
AT3G52910.1	Thale cress	nucleus	45.65	49.74
CDY13333	Canola	nucleus	43.96	49.73
Bra017240.1-P	Field mustard	nucleus	43.48	49.72
CDX84126	Canola	nucleus	46.62	49.23
GSMUA_Achr3P22790_001	Banana	nucleus	44.69	47.19
GSMUA_Achr8P07650_001	Banana	extracellular	35.02	45.89
CDX76249	Canola	nucleus	43.48	44.01
VIT_02s0025g02680.t01	Wine grape	nucleus	15.22	35.2
VIT_02s0025g04910.t01	Wine grape	nucleus	16.91	33.49
Bra019640.1-P	Field mustard	nucleus	42.75	32.9
CDY66284	Canola	nucleus	42.75	32.9
VIT_16s0039g01450.t01	Wine grape	nucleus	21.98	28.62
VIT_09s0002g01350.t01	Wine grape	nucleus	20.29	23.14
VIT_11s0016g01250.t01	Wine grape	nucleus	20.77	22.22
VIT_18s0001g08650.t01	Wine grape	nucleus	31.16	21.36
VIT_00s0494g00010.t01	Wine grape	nucleus	30.19	20.94
VIT_15s0048g01740.t01	Wine grape	nucleus, plasma membrane	16.67	17.16
VIT_16s0098g01080.t01	Wine grape	nucleus	22.71	16.32

Protein Annotations

EntrezGene:100249368	wikigene:100249368	MapMan:15.5.52.1	ProteinID:CCB55408	ProteinID:CCB55408.1	UniProt:F6HKI6
EMBL:FN595991	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EntrezGene:LOC100249368
wikigene:LOC100249368	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF12	SMART:SM00951	UniParc:UPI000210A155	ArrayExpress:VIT_08s0007g03760	EnsemblPlantsGene:VIT_08s0007g03760	EnsemblPlants:VIT_08s0007g03760.t01
InterPro:WRC_dom	RefSeq:XP_002277233	RefSeq:XP_002277233.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:17725858..17728579

Molecular Weight (calculated)

45225.1 Da

IEP (calculated)

8.608

GRAVY (calculated)

-0.643

Length

414 amino acids

Sequence
(BLAST)

001: MSMDFHLKQW RNQHESEEAP SGKMPRLLLD QQPSGSALPL FVPEPNSKIS NLSAFPDSTT TATRFSKTGG SYFSLAQWQE LELQALIFRH MLAGAAVPPE
101: LLQLIKKSLL NHPPYYLQHP LQHYQHYQPA LLQSGYWGRA AMDPEPGRCR RTDGKKWRCS RDVVTGQKYC ERHMHRGRNR SRKPVEIPTP AAAGGGGGAA
201: VASVGALKST TAAIAAQPLT TVAGGTHFAL SGPPPSIDLL HLNRSPPEPK TENKGLFEHR TENVSGDGRS DGRVLRHFFD DWPRSIQEPD NAANGSNNSQ
301: ATSSTYLSMS ILGHHSSDVS LKLSTGNGDE QSPQDVNAER ERPQLNWAAG WGTHQSAQMG GPLAEALRSA TSNSSPTSVL HQLPRGTASD TSYEGDCVPM
401: GKELNRMQNL LTIF

Best Arabidopsis Sequence Match ( AT3G52910.1 )
(BLAST)

001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH

Arabidopsis Description

GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.