Factsheet for VIT_02s0025g02680.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g04910.t01	Wine grape	nucleus	31.84	27.27
CDY03485	Canola	nucleus	43.02	22.13
CDY72447	Canola	nucleus, plastid	42.46	22.09
Bra019244.1-P	Field mustard	nucleus	45.25	21.6
CDY10989	Canola	nucleus	45.25	21.54
VIT_16s0039g01450.t01	Wine grape	nucleus	36.87	20.75
Bra013767.1-P	Field mustard	nucleus	42.46	20.49
Solyc08g083230.1.1	Tomato	nucleus	44.13	19.85
CDX92617	Canola	nucleus	43.02	18.92
PGSC0003DMT400031893	Potato	nucleus	43.02	18.25
VIT_11s0016g01250.t01	Wine grape	nucleus	39.11	18.09
AT4G24150.1	Thale cress	nucleus	49.16	17.85
VIT_09s0002g01350.t01	Wine grape	nucleus	35.75	17.63
VIT_08s0007g03760.t01	Wine grape	nucleus	35.2	15.22
VIT_16s0098g01080.t01	Wine grape	nucleus	43.58	13.54
VIT_15s0048g01740.t01	Wine grape	nucleus, plasma membrane	29.05	12.94
VIT_00s0494g00010.t01	Wine grape	nucleus	40.78	12.23
VIT_18s0001g08650.t01	Wine grape	nucleus	39.11	11.59

Protein Annotations

EntrezGene:100258227	wikigene:100258227	MapMan:15.5.52.1	ProteinID:CCB58302	ProteinID:CCB58302.1	UniProt:F6HU79
EMBL:FN596251	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EntrezGene:LOC100258227	wikigene:LOC100258227	PFAM:PF08879
PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF2	SMART:SM00951
UniParc:UPI0002109BA7	ArrayExpress:VIT_02s0025g02680	EnsemblPlantsGene:VIT_02s0025g02680	EnsemblPlants:VIT_02s0025g02680.t01	InterPro:WRC_dom	RefSeq:XP_002272535
RefSeq:XP_002272535.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:2331487..2332154

Molecular Weight (calculated)

20366.0 Da

IEP (calculated)

10.396

GRAVY (calculated)

-0.798

Length

179 amino acids

Sequence
(BLAST)

001: MAASLRVPFT AAQWQELERQ TIIYKYMMAS VPIPPELLIP ISRSLSDVTA SHSNRSLDLR FPNSSDPEPW RCRRTDGKKW RCSRDVAPDQ KYCERHTHKG
101: RPRSRKPVEL HSELINNSAT TTATTTSSNN KQPLNLPADT TKSFQDRSHL LNQTEGHHTS AFTTLASAPP YGQVRWVRV

Best Arabidopsis Sequence Match ( AT4G24150.3 )
(BLAST)

001: MGTRAERKED FVGGFGFGVV ENSHKDVMVL PHHHYYPSYS SPSSSSLCYC SAGVSDPMFS VSSNQAYTSS HSGMFTPAGS GSAAVTVADP FFSLSSSGEM
101: RRSMNEDAGA AFSEAQWHEL ERQRNIYKYM MASVPVPPEL LTPFPKNHQS NTNPDVTVAV ATGGSLQLGI ASSASNNTAD LEPWRCKRTD GKKWRCSRNV
201: IPDQKYCERH THKSRPRSRK HVESSHQSSH HNDIRTAKND TSQLVRTYPQ FYGQPISQIP VLSTLPSASS PYDHHRGLRW FTKEDDAIGT LNPETQEAVQ
301: LKVGSSRELK RGFDYDLNFR QKEPIVDQSF GALQGLLSLN QTPQHNQETR QFVVEGKQDE AMGSSLTLSM AGGGMEETEG TNQHQWVSHE GPSWLYSTTP
401: GGPLAEALCL GVSNNPSSST TTSSCSRSSS

Arabidopsis Description

GRF8Growth-regulating factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.