Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72447 | Canola | nucleus, plastid | 87.64 | 88.66 |
| CDY10989 | Canola | nucleus | 65.23 | 60.37 |
| CDX92617 | Canola | nucleus | 67.82 | 57.99 |
| AT4G24150.1 | Thale cress | nucleus | 72.41 | 51.12 |
| VIT_02s0025g02680.t01 | Wine grape | nucleus | 22.13 | 43.02 |
| Solyc08g083230.1.1 | Tomato | nucleus | 30.17 | 26.38 |
| CDY55116 | Canola | nucleus | 21.26 | 26.24 |
| PGSC0003DMT400031893 | Potato | nucleus | 29.89 | 24.64 |
| CDY66422 | Canola | nucleus | 22.13 | 24.6 |
| CDY51791 | Canola | nucleus | 20.4 | 21.71 |
| CDY28823 | Canola | nucleus | 20.69 | 20.75 |
| CDX83200 | Canola | nucleus | 23.28 | 20.56 |
| CDX79674 | Canola | nucleus | 21.55 | 20.38 |
| CDX73595 | Canola | nucleus | 22.13 | 20.21 |
| CDX84560 | Canola | nucleus | 21.26 | 20.11 |
| CDY29584 | Canola | nucleus | 23.56 | 20.1 |
| CDX67545 | Canola | nucleus | 20.69 | 19.78 |
| CDX75039 | Canola | nucleus | 21.84 | 19.74 |
| CDY13333 | Canola | nucleus | 20.69 | 19.67 |
| CDX84126 | Canola | nucleus | 22.13 | 19.64 |
| CDX78132 | Canola | nucleus | 21.26 | 19.63 |
| CDY43721 | Canola | nucleus | 19.54 | 19.15 |
| CDX72654 | Canola | nucleus | 23.85 | 18.78 |
| CDX75672 | Canola | nucleus | 24.14 | 18.63 |
| CDY70432 | Canola | nucleus | 12.93 | 18.52 |
| CDX76249 | Canola | nucleus | 21.26 | 18.09 |
| CDX69322 | Canola | nucleus | 23.28 | 17.57 |
| CDY21475 | Canola | nucleus | 22.41 | 15.69 |
| CDX82503 | Canola | nucleus | 15.52 | 14.75 |
| CDY33407 | Canola | nucleus | 16.95 | 14.75 |
| CDY39081 | Canola | nucleus | 16.67 | 14.57 |
| CDX71979 | Canola | nucleus | 16.09 | 14.55 |
| CDY55209 | Canola | nucleus | 16.09 | 14.36 |
| CDX75742 | Canola | nucleus | 14.94 | 14.25 |
| CDX97531 | Canola | nucleus | 15.8 | 14.18 |
| CDY66284 | Canola | nucleus | 21.55 | 13.94 |
| CDY37044 | Canola | nucleus | 16.95 | 13.5 |
| CDY27382 | Canola | nucleus | 16.95 | 13.29 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078END6 | EnsemblPlants:CDY03485 | ProteinID:CDY03485 | ProteinID:CDY03485.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00116151001 | InterPro:Gln-Leu-Gln_QLQ |
| InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 | PFscan:PS51667 |
| PANTHER:PTHR31602 | PANTHER:PTHR31602:SF2 | SMART:SM00951 | UniParc:UPI0004EE77B0 | InterPro:WRC_dom | SEG:seg |
Description
BnaC01g15970D
Coordinates
chrLK031943:-:710323..711735
Molecular Weight (calculated)
38684.6 Da
IEP (calculated)
7.125
GRAVY (calculated)
-0.833
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGTRAEHNK EDFVGCGFGF GVVEPSHREV MITSHHHHYP SYISPSSYSG SAGVTDPVFS ASLAAADPFY TLSSSGEMGR SMSEKEGAAA FSEAQWQELE
101: RQRNIYEYIM ASLPVPPELL TPFPKHPSHT YHQDVAMAKG GSLKLGITSN ASNNAADMEP WRCKRTDGKK WRCSRSAVPD QKYCERHTHK SRPRSRKHVE
201: SSQHNDTRTT KNAASHYAGT YPQLYGQPVN PFSNDHREFR WFMKEDDANA NLNPAVGPSR ELKRGFDYDL NFRQEEALVN QSFGALEGGG MEEAERRRNQ
301: QHQWVSHEGP SWLCYTAPGG PLAEALFLGA SNDPSASTTT SSCSRSSG
101: RQRNIYEYIM ASLPVPPELL TPFPKHPSHT YHQDVAMAKG GSLKLGITSN ASNNAADMEP WRCKRTDGKK WRCSRSAVPD QKYCERHTHK SRPRSRKHVE
201: SSQHNDTRTT KNAASHYAGT YPQLYGQPVN PFSNDHREFR WFMKEDDANA NLNPAVGPSR ELKRGFDYDL NFRQEEALVN QSFGALEGGG MEEAERRRNQ
301: QHQWVSHEGP SWLCYTAPGG PLAEALFLGA SNDPSASTTT SSCSRSSG
001: MGTRAERKED FVGGFGFGVV ENSHKDVMVL PHHHYYPSYS SPSSSSLCYC SAGVSDPMFS VSSNQAYTSS HSGMFTPAGS GSAAVTVADP FFSLSSSGEM
101: RRSMNEDAGA AFSEAQWHEL ERQRNIYKYM MASVPVPPEL LTPFPKNHQS NTNPDVTVAV ATGGSLQLGI ASSASNNTAD LEPWRCKRTD GKKWRCSRNV
201: IPDQKYCERH THKSRPRSRK HVESSHQSSH HNDIRTAKND TSQLVRTYPQ FYGQPISQIP VLSTLPSASS PYDHHRGLRW FTKEDDAIGT LNPETQEAVQ
301: LKVGSSRELK RGFDYDLNFR QKEPIVDQSF GALQGLLSLN QTPQHNQETR QFVVEGKQDE AMGSSLTLSM AGGGMEETEG TNQHQWVSHE GPSWLYSTTP
401: GGPLAEALCL GVSNNPSSST TTSSCSRSSS
101: RRSMNEDAGA AFSEAQWHEL ERQRNIYKYM MASVPVPPEL LTPFPKNHQS NTNPDVTVAV ATGGSLQLGI ASSASNNTAD LEPWRCKRTD GKKWRCSRNV
201: IPDQKYCERH THKSRPRSRK HVESSHQSSH HNDIRTAKND TSQLVRTYPQ FYGQPISQIP VLSTLPSASS PYDHHRGLRW FTKEDDAIGT LNPETQEAVQ
301: LKVGSSRELK RGFDYDLNFR QKEPIVDQSF GALQGLLSLN QTPQHNQETR QFVVEGKQDE AMGSSLTLSM AGGGMEETEG TNQHQWVSHE GPSWLYSTTP
401: GGPLAEALCL GVSNNPSSST TTSSCSRSSS
Arabidopsis Description
GRF8Growth-regulating factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.