Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G37740.1 | CDX86202 | AT5G28640.1 | 15326298 |
| AT4G37740.1 | CDY00027 | AT5G28640.1 | 15326298 |
| AT4G37740.1 | CDY05600 | AT5G28640.1 | 15326298 |
| AT4G37740.1 | CDY33883 | AT5G28640.1 | 15326298 |
| AT4G37740.1 | CDY57020 | AT5G28640.1 | 15326298 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55116 | Canola | nucleus | 90.1 | 100.0 |
| CDY29584 | Canola | nucleus | 95.21 | 73.04 |
| Bra017851.1-P | Field mustard | nucleus | 93.29 | 65.32 |
| CDX72654 | Canola | nucleus | 89.78 | 63.57 |
| CDX83200 | Canola | nucleus | 63.26 | 50.25 |
| CDX75672 | Canola | nucleus | 70.29 | 48.78 |
| CDX69322 | Canola | nucleus | 70.61 | 47.94 |
| AT4G37740.1 | Thale cress | nucleus | 81.47 | 47.66 |
| GSMUA_Achr4P32310_001 | Banana | nucleus | 21.41 | 46.21 |
| Zm00001d007465_P001 | Maize | nucleus | 32.59 | 32.69 |
| CDY21475 | Canola | nucleus | 50.16 | 31.59 |
| HORVU4Hr1G037480.5 | Barley | nucleus | 32.27 | 30.79 |
| Os12t0484900-01 | Rice | nucleus, plastid | 39.3 | 29.78 |
| Os03t0729500-01 | Rice | nucleus | 41.85 | 28.73 |
| Solyc02g092070.2.1 | Tomato | nucleus | 51.12 | 28.17 |
| KXG28671 | Sorghum | nucleus | 33.23 | 28.03 |
| VIT_00s0494g00010.t01 | Wine grape | nucleus | 53.35 | 27.97 |
| GSMUA_Achr1P27000_001 | Banana | nucleus | 37.7 | 27.83 |
| PGSC0003DMT400055151 | Potato | nucleus | 51.76 | 27.05 |
| KRG88739 | Soybean | nucleus | 50.8 | 26.77 |
| KRH05542 | Soybean | nucleus | 50.8 | 26.5 |
| Zm00001d006338_P002 | Maize | mitochondrion | 23.32 | 26.26 |
| GSMUA_Achr3P15140_001 | Banana | nucleus | 40.89 | 26.23 |
| KRH05543 | Soybean | nucleus | 50.48 | 25.94 |
| KRG88736 | Soybean | nucleus | 49.2 | 25.71 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.48 | 25.22 |
| CDY51791 | Canola | nucleus | 25.56 | 24.46 |
| GSMUA_Achr8P04970_001 | Banana | nucleus | 45.37 | 24.44 |
| HORVU4Hr1G003440.12 | Barley | nucleus | 31.31 | 24.02 |
| CDY13333 | Canola | nucleus | 27.48 | 23.5 |
| Os03t0674700-01 | Rice | nucleus | 31.95 | 23.47 |
| CDX67545 | Canola | nucleus | 27.16 | 23.35 |
| TraesCS4A01G291500.1 | Wheat | nucleus | 30.35 | 23.28 |
| CDX75039 | Canola | nucleus | 28.43 | 23.12 |
| CDX84560 | Canola | nucleus | 27.16 | 23.1 |
| Zm00001d033396_P003 | Maize | nucleus | 32.27 | 23.06 |
| CDY28823 | Canola | nucleus | 25.56 | 23.05 |
| CDX84126 | Canola | nucleus | 28.75 | 22.96 |
| Zm00001d033876_P004 | Maize | nucleus | 43.45 | 22.93 |
| CDX73595 | Canola | nucleus | 27.8 | 22.83 |
| CDX79674 | Canola | nucleus | 26.84 | 22.83 |
| CDY72447 | Canola | nucleus, plastid | 24.92 | 22.67 |
| TraesCS4D01G020300.1 | Wheat | nucleus | 30.03 | 22.65 |
| CDY70432 | Canola | nucleus | 17.57 | 22.63 |
| GSMUA_Achr7P27480_001 | Banana | nucleus | 43.77 | 22.57 |
| EER93679 | Sorghum | nucleus | 31.31 | 22.53 |
| EER90936 | Sorghum | nucleus | 43.13 | 22.46 |
| CDY03485 | Canola | nucleus | 24.6 | 22.13 |
| CDX78132 | Canola | nucleus | 26.52 | 22.02 |
| Zm00001d013346_P001 | Maize | nucleus | 40.89 | 21.88 |
| CDY43721 | Canola | nucleus | 24.28 | 21.41 |
| Zm00001d013555_P001 | Maize | nucleus | 29.71 | 21.33 |
| TraesCS4D01G059600.1 | Wheat | nucleus | 38.66 | 20.93 |
| HORVU4Hr1G010080.2 | Barley | nucleus | 40.58 | 20.85 |
| TraesCS4A01G255000.1 | Wheat | nucleus | 40.26 | 20.76 |
| CDY10989 | Canola | nucleus | 24.92 | 20.74 |
| TraesCS4B01G060000.1 | Wheat | nucleus | 39.62 | 20.29 |
| CDX76249 | Canola | nucleus | 25.56 | 19.56 |
| CDX82503 | Canola | nucleus | 22.36 | 19.13 |
| CDX97531 | Canola | nucleus | 23.64 | 19.07 |
| CDY55209 | Canola | nucleus | 23.64 | 18.97 |
| CDX71979 | Canola | nucleus | 23.32 | 18.96 |
| CDY39081 | Canola | nucleus | 23.96 | 18.84 |
| CDX75742 | Canola | nucleus | 21.73 | 18.63 |
| CDX92617 | Canola | nucleus | 23.96 | 18.43 |
| CDY33407 | Canola | nucleus | 21.41 | 16.75 |
| CDY37044 | Canola | nucleus | 21.41 | 15.33 |
| CDY66284 | Canola | nucleus | 26.2 | 15.24 |
| CDY27382 | Canola | nucleus | 21.09 | 14.86 |
| Zm00001d002049_P001 | Maize | cytosol, plastid | 4.47 | 14.29 |
| GSMUA_Achr8P26530_001 | Banana | nucleus | 46.01 | 10.04 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078JM13 | UniProt:A0A078JM13 | EnsemblPlants:CDY66422 | ProteinID:CDY66422 | ProteinID:CDY66422.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00053590001 |
| InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 |
| PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF22 | SMART:SM00951 | UniParc:UPI0004EEF9CE | InterPro:WRC_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA08g30080DBnaA08g30080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JM13]
Coordinates
chrLK035256:+:12083..14457
Molecular Weight (calculated)
34522.5 Da
IEP (calculated)
9.525
GRAVY (calculated)
-0.637
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MHVELLDLLD EIPKTYDVVR RGYGCGGMMM SMQGKGPFTL TQWAELEQQA LIYKYITANV PVPSSLLISI QKSFFPYGSL PPSSFGWGTF HLGFAGGNMD
101: PEPGRCRRTD GKKWRCSRDA VPDQKYCERH INRGRHRSRK LVEVQSNQTA AASKAVTAQQ QSVAAGGINR NRSLTTAAQY INPSNNSRVR SQVYPSTVNL
201: QPKESPKQRN NNSSFEFGHI SSDSLVNPHN HSSWPEELKS DWTQLSMSIP VASSSSSSPS STGEDKATLS PLRLSQESEQ ETTLKKVNTW IPISWGNSLG
301: GPLGEVLNST TNS
101: PEPGRCRRTD GKKWRCSRDA VPDQKYCERH INRGRHRSRK LVEVQSNQTA AASKAVTAQQ QSVAAGGINR NRSLTTAAQY INPSNNSRVR SQVYPSTVNL
201: QPKESPKQRN NNSSFEFGHI SSDSLVNPHN HSSWPEELKS DWTQLSMSIP VASSSSSSPS STGEDKATLS PLRLSQESEQ ETTLKKVNTW IPISWGNSLG
301: GPLGEVLNST TNS
001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT
Arabidopsis Description
GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.