Factsheet for HORVU4Hr1G037480.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G010610.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	HORVU4Hr1G010610.1	AT5G28640.1	15326298
AT4G37740.1	HORVU4Hr1G010610.1	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007465_P001	Maize	nucleus	54.27	57.05
KXG28671	Sorghum	nucleus	59.15	52.29
CDY55116	Canola	nucleus	29.88	34.75
CDY66422	Canola	nucleus	30.79	32.27
GSMUA_AchrUn_...	Banana	nucleus	31.4	30.21
GSMUA_Achr3P15140_001	Banana	nucleus	42.99	28.89
HORVU2Hr1G094460.2	Barley	mitochondrion, plasma membrane	18.6	27.23
CDY29584	Canola	nucleus	33.54	26.96
HORVU6Hr1G065740.4	Barley	nucleus	16.77	25.82
CDX83200	Canola	nucleus	30.18	25.13
CDX72654	Canola	nucleus	33.54	24.89
HORVU4Hr1G010080.2	Barley	nucleus	45.43	24.47
Bra017851.1-P	Field mustard	nucleus	33.23	24.38
GSMUA_Achr8P04970_001	Banana	nucleus	42.99	24.27
Bra011781.1-P	Field mustard	nucleus	33.23	24.17
HORVU2Hr1G094470.2	Barley	nucleus	18.6	24.11
CDX75672	Canola	nucleus	32.93	23.95
GSMUA_Achr7P27480_001	Banana	nucleus	43.9	23.72
CDX69322	Canola	nucleus	32.93	23.43
VIT_18s0001g08650.t01	Wine grape	nucleus	42.07	22.85
KRG88739	Soybean	nucleus	39.94	22.05
GSMUA_Achr1P27000_001	Banana	nucleus	28.35	21.93
Bra000575.1-P	Field mustard	nucleus	34.15	21.62
AT4G37740.1	Thale cress	nucleus	35.06	21.5
AT2G22840.1	Thale cress	nucleus	34.15	21.13
KRG88736	Soybean	nucleus	38.41	21.04
KRH05542	Soybean	nucleus	38.41	21.0
KRH05543	Soybean	nucleus	38.72	20.85
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	37.8	20.77
Solyc04g077510.2.1	Tomato	nucleus	37.5	20.67
HORVU7Hr1G034610.4	Barley	mitochondrion	19.51	20.45
HORVU4Hr1G003440.12	Barley	nucleus	24.39	19.61
HORVU6Hr1G035720.1	Barley	cytosol, mitochondrion, nucleus	17.99	18.79
CDY21475	Canola	nucleus	28.05	18.51
HORVU6Hr1G068370.1	Barley	nucleus	21.34	17.95
HORVU0Hr1G016590.2	Barley	cytosol, nucleus	11.59	17.92
HORVU7Hr1G008680.11	Barley	cytosol, mitochondrion, nucleus, vacuole	21.65	17.79
HORVU6Hr1G081210.1	Barley	nucleus	21.65	17.19
HORVU0Hr1G016610.1	Barley	plastid	20.73	16.31
HORVU2Hr1G054270.3	Barley	plastid	14.02	15.33
HORVU0Hr1G026650.1	Barley	mitochondrion, nucleus	3.66	10.53
GSMUA_Achr8P26530_001	Banana	nucleus	45.43	10.39

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A287NUA6	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	EnsemblPlantsGene:HORVU4Hr1G037480	EnsemblPlants:HORVU4Hr1G037480.5	InterPro:IPR014977	InterPro:IPR014978
PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF6
SMART:SM00951	UniParc:UPI000B472364	InterPro:WRC_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr4H:+:280246632..280268406

Molecular Weight (calculated)

35828.9 Da

IEP (calculated)

8.812

GRAVY (calculated)

-0.629

Length

328 amino acids

Sequence
(BLAST)

001: MLSSCAGGGG GHPGSPQKHG RCEEQEAPDG FLETAGASPA PPSSCSFLGT TGFPRAQMLS FSNDVAGLGL SSGTSMQGFL ARVRGPFTPT QWMELEHQAL
101: IYKHIAAKAP VPSSWLLPIR RSLNPWAGWA PFRSSGADVE PRRCRRTDGK KWRCSRDSVG DQKYCERHIN HGRQRSRKHV EGRKMTTTVA EQTMAVSGGF
201: SSHCQAVAWQ QQVKSLAANV TDPFPRQSNR EPLEKQSVVE QSLVSTTMHS FDFSSSHSSS NCDKVAFLPL KLHHDLDQSY ITHGAGSSSE KGYRLQETWS
301: PVTRETLDDG PLGEVFRSKS CQSAYGTS

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.