Factsheet for GSMUA_AchrUn_randomP15490_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr8P20680_001
GSMUA_Achr9P10760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	GSMUA_Achr10P...	AT5G28640.1	15326298
AT2G22840.1	GSMUA_Achr8P20680_001	AT5G28640.1	15326298
AT2G22840.1	GSMUA_Achr9P10760_001	AT5G28640.1	15326298
AT4G37740.1	GSMUA_Achr10P...	AT5G28640.1	15326298
AT4G37740.1	GSMUA_Achr8P20680_001	AT5G28640.1	15326298
AT4G37740.1	GSMUA_Achr9P10760_001	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P32310_001	Banana	nucleus	19.06	44.83
GSMUA_Achr5P20170_001	Banana	extracellular	18.77	37.43
GSMUA_Achr3P15140_001	Banana	nucleus	47.21	32.99
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	19.06	31.71
HORVU4Hr1G037480.5	Barley	nucleus	30.21	31.4
GSMUA_Achr8P12060_001	Banana	extracellular	18.48	31.19
GSMUA_Achr1P27000_001	Banana	nucleus	37.83	30.42
Zm00001d007465_P001	Maize	nucleus	27.27	29.81
CDY55116	Canola	nucleus	24.63	29.79
GSMUA_Achr8P04970_001	Banana	nucleus	49.85	29.26
KXG28671	Sorghum	nucleus	31.09	28.57
GSMUA_Achr7P27480_001	Banana	nucleus	49.56	27.84
CDY66422	Canola	nucleus	25.22	27.48
Os12t0484900-01	Rice	nucleus, plastid	32.26	26.63
CDY29584	Canola	nucleus	30.79	25.74
CDX72654	Canola	nucleus	31.67	24.43
CDX75672	Canola	nucleus	32.26	24.39
Bra011781.1-P	Field mustard	nucleus	32.26	24.39
Bra017851.1-P	Field mustard	nucleus	31.96	24.38
CDX69322	Canola	nucleus	32.55	24.08
AT2G22840.1	Thale cress	nucleus	36.36	23.4
Os03t0729500-01	Rice	nucleus	31.09	23.25
CDY21475	Canola	nucleus	33.43	22.94
Bra000575.1-P	Field mustard	nucleus	34.31	22.59
AT4G37740.1	Thale cress	nucleus	35.19	22.43
Zm00001d033876_P004	Maize	nucleus	38.71	22.26
CDX83200	Canola	nucleus	25.51	22.08
TraesCS4D01G059600.1	Wheat	nucleus	36.95	21.8
EER90936	Sorghum	nucleus	38.42	21.8
TraesCS4A01G255000.1	Wheat	nucleus	38.12	21.42
GSMUA_Achr8P30640_001	Banana	nucleus	19.94	21.25
HORVU4Hr1G010080.2	Barley	nucleus	37.83	21.18
TraesCS4B01G060000.1	Wheat	nucleus	37.83	21.11
Zm00001d013346_P001	Maize	nucleus	35.78	20.85
GSMUA_Achr10P...	Banana	nucleus	19.65	19.88
GSMUA_Achr6P01270_001	Banana	nucleus	19.35	19.64
GSMUA_Achr7P02330_001	Banana	nucleus	19.65	19.48
GSMUA_Achr1P23840_001	Banana	nucleus	19.94	18.94
GSMUA_Achr3P22790_001	Banana	nucleus	21.7	18.88
GSMUA_Achr1P21940_001	Banana	nucleus	19.94	17.94
GSMUA_Achr8P07650_001	Banana	extracellular	15.84	17.09
GSMUA_AchrUn_...	Banana	nucleus	19.94	16.55
GSMUA_Achr2P04650_001	Banana	extracellular	20.53	16.24
GSMUA_Achr8P26530_001	Banana	nucleus	48.39	11.51

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
EnsemblPlantsGene:GSMUA_AchrUn_randomG15490_001	EnsemblPlants:GSMUA_AchrUn_randomP15490_001	EnsemblPlants:GSMUA_AchrUn_randomT15490_001	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M0U9F8	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF40	SMART:SM00951	UniParc:UPI000294F034	InterPro:WRC_dom	SEG:seg	:

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG15490_001]

Coordinates

chrchrUn_random:-:73569939..73572404

Molecular Weight (calculated)

37443.4 Da

IEP (calculated)

8.331

GRAVY (calculated)

-0.338

Length

341 amino acids

Sequence
(BLAST)

001: MDFGGVVDMD MLVAASSDAG GVYSSSMTSS DTELSRQRVL SGSSLQKNET SPEAEDHDMR CLKLARTEPK VAPTAKVAPF LVPSYPYLFP DGAQMLSFSS
101: TFKQEATPPD GTLPYQHHRS APTSTPSCLC SGSFDVNMNE VLARVRWPFT PTQWLELERQ ALIYKHIVAN VAIPPSLFIP FRTSLSTFGF SSLPVGSFGS
201: STFGWGLYHQ GYSGNDDPEP GRCRRTDGKK WRCSREAVAD QKYCERHINR GRHRSRKHVE GRTSHAMKAI PALAPSPSVS ANQSSGISGK LATSQHQTES
301: LQTNMTNCCP AQVLCIWLIS NLNINDHGLL LKLILLFNLA N

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.