Factsheet for GSMUA_Achr6P01270_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005387_P001	Maize	nucleus	10.42	56.45
Zm00001d042010_P001	Maize	nucleus	11.01	53.62
GSMUA_Achr10P...	Banana	nucleus	48.51	48.37
GSMUA_Achr1P23840_001	Banana	nucleus	49.4	46.24
Zm00001d014421_P001	Maize	cytosol	12.8	43.88
GSMUA_AchrUn_...	Banana	nucleus	50.6	41.36
GSMUA_Achr2P04650_001	Banana	extracellular	49.4	38.52
GSMUA_Achr5P20170_001	Banana	extracellular	18.45	36.26
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	19.94	32.68
GSMUA_Achr8P12060_001	Banana	extracellular	19.35	32.18
GSMUA_Achr8P30640_001	Banana	nucleus	29.17	30.62
GSMUA_Achr4P32310_001	Banana	nucleus	12.8	29.66
GSMUA_Achr7P02330_001	Banana	nucleus	29.46	28.78
GSMUA_Achr1P21940_001	Banana	nucleus	32.44	28.76
HORVU0Hr1G026650.1	Barley	mitochondrion, nucleus	8.33	24.56
GSMUA_Achr8P07650_001	Banana	extracellular	21.73	23.1
GSMUA_Achr1P27000_001	Banana	nucleus	27.38	21.7
GSMUA_Achr3P22790_001	Banana	nucleus	25.0	21.43
KRH76298	Soybean	nucleus	26.49	19.43
GSMUA_AchrUn_...	Banana	nucleus	19.64	19.35
GSMUA_Achr8P04970_001	Banana	nucleus	32.74	18.93
GSMUA_Achr7P27480_001	Banana	nucleus	33.33	18.45
GSMUA_Achr3P15140_001	Banana	nucleus	25.89	17.83
KRH65240	Soybean	nucleus	24.4	17.52
GSMUA_Achr8P26530_001	Banana	nucleus	32.44	7.6
CDX76250	Canola	cytosol, golgi, mitochondrion, nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
EnsemblPlantsGene:GSMUA_Achr6G01270_001	EnsemblPlants:GSMUA_Achr6P01270_001	EnsemblPlants:GSMUA_Achr6T01270_001	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M0T375	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF8	SMART:SM00951	UniParc:UPI0002954934	InterPro:WRC_dom	SEG:seg	:

Description

growth-regulating factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G01270_001]

Coordinates

chr6:+:834927..838131

Molecular Weight (calculated)

36925.0 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.661

Length

336 amino acids

Sequence
(BLAST)

001: MNNTAAAAAI EGRPPFTASQ LEELRVQVLI FKHILMGVPV PPELLLLVRR SLEAMAARLY QHPASSDGHC SYFGKKFDPE PGRCRRTDGK KWRCSKDAHP
101: ESRYCERHMH RGRNRSRKPV ESQPVAPSQS ASTVISLAPS GSGGSDSKSI PMHPGTGAQV PFSGGMSCFQ LQPGTGSHET GSKEFRYPYG DKSEAGEHGF
201: FPEVSGSARG LEMDFPLDSS WGLMPSQMPN ALGFESNYLQ LPAFNDLGQV TVSSLAKQDQ SQHSFFGNEF GSEEPVKQSQ ELRPFFDEWP KTRGPWSDLE
301: DERSNRSSFS TTQLSISIPV TSSDFSTSSS RSPIDD

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.