Factsheet for GSMUA_Achr4P32310_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr8P20680_001
GSMUA_Achr9P10760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	GSMUA_Achr10P...	AT5G28640.1	15326298
AT2G22840.1	GSMUA_Achr8P20680_001	AT5G28640.1	15326298
AT2G22840.1	GSMUA_Achr9P10760_001	AT5G28640.1	15326298
AT4G37740.1	GSMUA_Achr10P...	AT5G28640.1	15326298
AT4G37740.1	GSMUA_Achr8P20680_001	AT5G28640.1	15326298
AT4G37740.1	GSMUA_Achr9P10760_001	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20170_001	Banana	extracellular	35.17	29.82
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	35.86	25.37
GSMUA_Achr8P12060_001	Banana	extracellular	34.48	24.75
CDY55116	Canola	nucleus	46.21	23.76
CDY66422	Canola	nucleus	46.21	21.41
GSMUA_AchrUn_...	Banana	nucleus	44.83	19.06
CDX83200	Canola	nucleus	50.34	18.53
Zm00001d006338_P002	Maize	mitochondrion	35.17	18.35
GSMUA_Achr1P27000_001	Banana	nucleus	52.41	17.92
CDY29584	Canola	nucleus	46.21	16.42
GSMUA_Achr3P15140_001	Banana	nucleus	53.1	15.78
CDX72654	Canola	nucleus	47.59	15.61
Bra017851.1-P	Field mustard	nucleus	47.59	15.44
GSMUA_Achr10P...	Banana	nucleus	35.86	15.43
VIT_18s0001g08650.t01	Wine grape	nucleus	60.69	14.57
CDX75672	Canola	nucleus	44.14	14.19
Bra011781.1-P	Field mustard	nucleus	44.14	14.19
Bra000575.1-P	Field mustard	nucleus	50.34	14.09
GSMUA_Achr8P30640_001	Banana	nucleus	31.03	14.06
KRG88739	Soybean	nucleus	57.24	13.97
AT2G22840.1	Thale cress	nucleus	51.03	13.96
GSMUA_Achr1P23840_001	Banana	nucleus	34.48	13.93
KRG88736	Soybean	nucleus	57.24	13.86
KRH05542	Soybean	nucleus	57.24	13.83
CDX69322	Canola	nucleus	43.45	13.67
GSMUA_Achr7P02330_001	Banana	nucleus	32.41	13.66
CDY21475	Canola	nucleus	46.21	13.48
KRH05543	Soybean	nucleus	56.55	13.46
Solyc04g077510.2.1	Tomato	nucleus	55.17	13.45
GSMUA_Achr8P07650_001	Banana	extracellular	28.97	13.29
AT4G37740.1	Thale cress	nucleus	48.97	13.27
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	54.48	13.23
GSMUA_Achr8P04970_001	Banana	nucleus	51.72	12.91
GSMUA_Achr6P01270_001	Banana	nucleus	29.66	12.8
GSMUA_Achr3P22790_001	Banana	nucleus	34.48	12.76
GSMUA_AchrUn_...	Banana	nucleus	35.17	12.41
GSMUA_Achr7P27480_001	Banana	nucleus	51.72	12.36
GSMUA_Achr1P21940_001	Banana	nucleus	31.72	12.14
GSMUA_Achr2P04650_001	Banana	extracellular	35.17	11.83
GSMUA_Achr8P26530_001	Banana	nucleus	54.48	5.51
Zm00001d002049_P001	Maize	cytosol, plastid	1.38	2.04

Protein Annotations

MapMan:15.5.52.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	EnsemblPlantsGene:GSMUA_Achr4G32310_001	EnsemblPlants:GSMUA_Achr4P32310_001	EnsemblPlants:GSMUA_Achr4T32310_001	InterPro:IPR014977	UniProt:M0STZ3
PFAM:PF08879	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF2	UniParc:UPI000294DBE9	InterPro:WRC_dom

Description

Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G32310_001]

Coordinates

chr4:+:29135874..29136426

Molecular Weight (calculated)

15938.8 Da

IEP (calculated)

10.092

GRAVY (calculated)

-0.813

Length

145 amino acids

Sequence
(BLAST)

001: MELENQTLIY NYIDANARIP SNPFSPNGFS AFSIGSLRAS ACTELMGSFH GGTCGNADSE PGRCRRTDGK KWRCSRNAVG DQKYCERHLN RGRHRSRKPV
101: EGPCGRATRP TPFISSSQAG LGSRSCDGLA MARQQMSNLQ PQLNR

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.