Factsheet for Zm00001d006338_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d033905_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	Zm00001d033905_P001	AT5G28640.1	15326298
AT4G37740.1	Zm00001d033905_P001	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002049_P001	Maize	cytosol, plastid	33.09	93.88
Zm00001d005387_P001	Maize	nucleus	9.71	43.55
Zm00001d042010_P001	Maize	nucleus	10.79	43.48
GSMUA_Achr4P32310_001	Banana	nucleus	18.35	35.17
Zm00001d014421_P001	Maize	cytosol	10.79	30.61
CDY55116	Canola	nucleus	26.26	25.89
CDY66422	Canola	nucleus	26.26	23.32
Zm00001d007465_P001	Maize	nucleus	25.9	23.08
Zm00001d051456_P001	Maize	nucleus	18.35	23.08
CDX83200	Canola	nucleus	31.65	22.34
CDY29584	Canola	nucleus	27.34	18.63
Zm00001d033876_P004	Maize	nucleus	39.57	18.55
Zm00001d002429_P003	Maize	nucleus	23.74	18.38
Bra017851.1-P	Field mustard	nucleus	29.14	18.12
CDX72654	Canola	nucleus	28.78	18.1
Zm00001d017742_P001	Maize	plastid	26.26	17.89
Zm00001d013346_P001	Maize	nucleus	37.41	17.78
Bra000575.1-P	Field mustard	nucleus	32.73	17.57
Zm00001d026240_P006	Maize	plastid	24.82	17.38
AT2G22840.1	Thale cress	nucleus	33.09	17.36
Bra011781.1-P	Field mustard	nucleus	27.7	17.07
CDX75672	Canola	nucleus	27.34	16.85
Zm00001d045533_P001	Maize	nucleus	21.94	16.67
VIT_18s0001g08650.t01	Wine grape	nucleus	35.97	16.56
Zm00001d037117_P001	Maize	mitochondrion, nucleus	21.58	16.3
CDX69322	Canola	nucleus	26.98	16.27
Zm00001d018260_P001	Maize	mitochondrion	21.94	16.22
KRG88736	Soybean	nucleus	34.53	16.03
Zm00001d035965_P004	Maize	nucleus	21.94	16.01
KRH05542	Soybean	nucleus	34.17	15.83
KRG88739	Soybean	nucleus	33.81	15.82
Zm00001d052112_P001	Maize	mitochondrion, nucleus	22.66	15.71
Zm00001d000238_P001	Maize	nucleus	21.94	15.56
KRH05543	Soybean	nucleus	33.81	15.44
AT4G37740.1	Thale cress	nucleus	29.5	15.33
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	32.73	15.24
Solyc04g077510.2.1	Tomato	nucleus	32.37	15.13
CDY21475	Canola	nucleus	26.62	14.89
Zm00001d021362_P001	Maize	extracellular, nucleus	14.03	14.5
Zm00001d006348_P001	Maize	nucleus	14.03	14.29
Zm00001d033396_P003	Maize	nucleus	22.3	14.16
Zm00001d013555_P001	Maize	nucleus	21.58	13.76

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A1D6EVD8	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:IPR014977	ProteinID:ONM23545.1	PFAM:PF08879	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF40	UniParc:UPI000842CAE1	InterPro:WRC_dom	EnsemblPlantsGene:Zm00001d006338	EnsemblPlants:Zm00001d006338_P002
EnsemblPlants:Zm00001d006338_T002	SEG:seg	:	:	:	:

Description

Growth-regulating factor 2

Coordinates

chr2:+:204998322..205002208

Molecular Weight (calculated)

30479.4 Da

IEP (calculated)

10.454

GRAVY (calculated)

-0.396

Length

278 amino acids

Sequence
(BLAST)

001: MPPPRTSKPR RFFPFPNLDW RYCLLPVGTV GWGSFQLGYS GNADLEPGRC RRTDGKKWWC SRDAVADQKY CERHMNRGRH RSRKHVEGQP GHAAKAMSAV
101: AVAAAAAALA GAEATAAAGL AVNQHRQPGK SYATVFGQVY SKADKPKYNL LVMNLCRLCF FFLNPPHTVQ FLAVEKKSHP SIHLHFKFGR IYDVSSRGRA
201: LARSTEDLAR ATGSVAASPS GSTSSTSSSP ESRATSPFPA LDSDPCRTFL HCYLQKGKEC RAGSNVVGIY LRLTTMTI

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.