Factsheet for Zm00001d033905_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000238_P001
Zm00001d002049_P001
Zm00001d006338_P002
Zm00001d007465_P001
Zm00001d013346_P001
Zm00001d013555_P001
Zm00001d018260_P001
Zm00001d033396_P003
Zm00001d033876_P004
Zm00001d037117_P001
Zm00001d052112_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28640.1	Zm00001d002049_P001	AT2G22840.1	15326298
AT5G28640.1	Zm00001d006338_P002	AT2G22840.1	15326298
AT5G28640.1	Zm00001d007465_P001	AT2G22840.1	15326298
AT5G28640.1	Zm00001d013346_P001	AT2G22840.1	15326298
AT5G28640.1	Zm00001d013555_P001	AT2G22840.1	15326298
AT5G28640.1	Zm00001d033396_P003	AT2G22840.1	15326298
AT5G28640.1	Zm00001d033876_P004	AT2G22840.1	15326298
AT5G28640.1	Zm00001d000238_P001	AT3G13960.1	15960617
AT5G28640.1	Zm00001d018260_P001	AT3G13960.1	15960617
AT5G28640.1	Zm00001d037117_P001	AT3G13960.1	15960617
AT5G28640.1	Zm00001d052112_P001	AT3G13960.1	15960617
AT5G28640.1	Zm00001d002049_P001	AT4G37740.1	15326298
AT5G28640.1	Zm00001d006338_P002	AT4G37740.1	15326298
AT5G28640.1	Zm00001d007465_P001	AT4G37740.1	15326298
AT5G28640.1	Zm00001d013346_P001	AT4G37740.1	15326298
AT5G28640.1	Zm00001d013555_P001	AT4G37740.1	15326298
AT5G28640.1	Zm00001d033396_P003	AT4G37740.1	15326298
AT5G28640.1	Zm00001d033876_P004	AT4G37740.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90925	Sorghum	nucleus	89.43	90.22
Os03t0733600-01	Rice	nucleus	72.69	72.69
TraesCS4A01G250600.1	Wheat	nucleus	69.16	69.47
TraesCS4D01G062900.1	Wheat	nucleus	66.52	67.11
TraesCS4B01G064000.1	Wheat	nucleus	66.08	66.67
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	70.48	65.04
GSMUA_Achr10P...	Banana	nucleus	51.1	54.21
GSMUA_Achr8P20680_001	Banana	nucleus	50.22	52.53
CDY00027	Canola	nucleus	45.81	51.23
CDY57020	Canola	nucleus	45.81	51.23
GSMUA_Achr9P10760_001	Banana	cytosol	53.74	50.83
Bra036131.1-P	Field mustard	nucleus	44.93	50.25
AT5G28640.1	Thale cress	nucleus	45.37	49.05
Bra010002.1-P	Field mustard	nucleus	43.61	48.77
CDY05600	Canola	nucleus	44.05	48.54
Bra020616.1-P	Field mustard	nucleus	43.61	48.53
CDY33883	Canola	nucleus	43.61	48.29
KRG92707	Soybean	nucleus	43.17	46.23
KRH34114	Soybean	nucleus	42.73	45.75
Solyc04g009820.2.1	Tomato	nucleus	41.85	45.67
KRG97010	Soybean	nucleus	41.41	44.76
VIT_14s0081g00200.t01	Wine grape	nucleus	43.61	44.39
PGSC0003DMT400002573	Potato	nucleus	43.17	43.95
PGSC0003DMT400065405	Potato	nucleus	41.41	43.93
Solyc11g006230.1.1	Tomato	nucleus	41.85	42.79
VIT_07s0005g02950.t01	Wine grape	nucleus	39.65	40.18
KRH68767	Soybean	cytosol	38.33	33.85
CDX86202	Canola	endoplasmic reticulum, extracellular	14.1	33.33
Zm00001d023767_P001	Maize	cytosol	25.55	31.87
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	25.11	31.15
Zm00001d048833_P001	Maize	extracellular	28.19	29.09

Protein Annotations

EntrezGene:100101544	MapMan:15.5.52.2	UniProt:A5HEH4	EMBL:BT037547	EMBL:BT042240	EMBL:EF515854
EMBL:EU960283	GO:GO:0000003	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791
GO:GO:0009955	GO:GO:0009987	GO:GO:0048366	GO:GO:0048825	GO:GO:1903506	GO:GO:1903508
ProteinID:ONM08905.1	PFAM:PF05030	PANTHER:PTHR23107	PANTHER:PTHR23107:SF15	InterPro:SS18_fam	UniParc:UPI000150B86E
EnsemblPlantsGene:Zm00001d033905	EnsemblPlants:Zm00001d033905_P001	EnsemblPlants:Zm00001d033905_T001	SEG:seg	:	:

Description

growth-regulating-factor-interacting factor1 growth-regulating-factor-inteacting factor1

Coordinates

chr1:-:278134999..278138569

Molecular Weight (calculated)

23604.9 Da

IEP (calculated)

5.498

GRAVY (calculated)

-0.518

Length

227 amino acids

Sequence
(BLAST)

001: MQQQHLMQMN QNMMGGYTSP AAVTTDLIQQ YLDENKQLIL AILDNQNNGK AEECERHQAK LQHNLMYLAA IADSQPPQTA PLSQYPSNLM MQPGPRYMPP
101: QSGQMMNPQS LMAARSSMMY AHPSLSPLQQ QQAAHGQLGM APGGGGGGTT SGFSILHGEA SMGGGGAGAG AGNNMMNAGM FSGFGRSGSG AKEGSTSLSV
201: DVRGGTSSGA QSGDGEYLKV GTEEEGS

Best Arabidopsis Sequence Match ( AT5G28640.1 )
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN

Arabidopsis Description

GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.