Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010002.1-P | Field mustard | nucleus | 86.19 | 89.16 |
| Bra020616.1-P | Field mustard | nucleus | 85.71 | 88.24 |
| CDY00027 | Canola | nucleus | 85.24 | 88.18 |
| CDY57020 | Canola | nucleus | 85.24 | 88.18 |
| CDY05600 | Canola | nucleus | 86.19 | 87.86 |
| CDY33883 | Canola | nucleus | 85.71 | 87.8 |
| Bra036131.1-P | Field mustard | nucleus | 80.95 | 83.74 |
| Solyc04g009820.2.1 | Tomato | nucleus | 70.95 | 71.63 |
| PGSC0003DMT400065405 | Potato | nucleus | 71.9 | 70.56 |
| KRH34114 | Soybean | nucleus | 66.67 | 66.04 |
| KRG92707 | Soybean | nucleus | 66.19 | 65.57 |
| PGSC0003DMT400002573 | Potato | nucleus | 68.1 | 64.13 |
| Solyc11g006230.1.1 | Tomato | nucleus | 65.71 | 62.16 |
| KRG97010 | Soybean | nucleus | 60.48 | 60.48 |
| CDX86202 | Canola | endoplasmic reticulum, extracellular | 25.24 | 55.21 |
| GSMUA_Achr10P... | Banana | nucleus | 54.29 | 53.27 |
| VIT_07s0005g02950.t01 | Wine grape | nucleus | 55.24 | 51.79 |
| GSMUA_Achr8P20680_001 | Banana | nucleus | 53.33 | 51.61 |
| EER90925 | Sorghum | nucleus | 50.95 | 47.56 |
| Os03t0733600-01 | Rice | nucleus | 50.95 | 47.14 |
| TraesCS4B01G064000.1 | Wheat | nucleus | 50.0 | 46.67 |
| TraesCS4D01G062900.1 | Wheat | nucleus | 49.52 | 46.22 |
| TraesCS4A01G250600.1 | Wheat | nucleus | 49.52 | 46.02 |
| KRH68767 | Soybean | cytosol | 55.71 | 45.53 |
| GSMUA_Achr9P10760_001 | Banana | cytosol | 51.9 | 45.42 |
| Zm00001d033905_P001 | Maize | nucleus | 49.05 | 45.37 |
| HORVU4Hr1G010610.1 | Barley | cytosol, mitochondrion, nucleus | 48.1 | 41.06 |
| AT4G00850.1 | Thale cress | cytosol, extracellular, nucleus | 34.29 | 32.29 |
| AT1G01160.2 | Thale cress | cytosol, nucleus, vacuole | 32.38 | 29.69 |
Protein Annotations
| MapMan:15.5.52.2 | EntrezGene:832968 | ProteinID:AED93820.1 | EMBL:AF272705 | Symbol:AN3 | ProteinID:ANM71104.1 |
| ProteinID:ANM71105.1 | ArrayExpress:AT5G28640 | EnsemblPlantsGene:AT5G28640 | RefSeq:AT5G28640 | TAIR:AT5G28640 | RefSeq:AT5G28640-TAIR-G |
| EnsemblPlants:AT5G28640.1 | TAIR:AT5G28640.1 | EMBL:AY102639 | EMBL:BT002848 | EMBL:BT004462 | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003713 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008283 | GO:GO:0009058 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009955 | GO:GO:0009987 | GO:GO:0048366 | GO:GO:0048825 |
| GO:GO:1903506 | GO:GO:1903508 | RefSeq:NP_001332659.1 | RefSeq:NP_001332660.1 | RefSeq:NP_198216.2 | PFAM:PF05030 |
| PO:PO:0000013 | PO:PO:0000017 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR23107 |
| PANTHER:PTHR23107:SF6 | UniProt:Q8L8A5 | InterPro:SS18_fam | UniParc:UPI000000BDF7 | SEG:seg | : |
Description
GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
Coordinates
chr5:-:10647467..10650062
Molecular Weight (calculated)
22465.1 Da
IEP (calculated)
6.219
GRAVY (calculated)
-0.800
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.