CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88736
KRG88739
KRG96154
KRH05542
KRH05543
KRH06183
KRH30830
KRH32671
KRH47599
KRH67865

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28640.1	KRG88736	AT2G22840.1	15326298
AT5G28640.1	KRG88739	AT2G22840.1	15326298
AT5G28640.1	KRH05542	AT2G22840.1	15326298
AT5G28640.1	KRH05543	AT2G22840.1	15326298
AT5G28640.1	KRH06183	AT3G13960.1	15960617
AT5G28640.1	KRH47599	AT3G13960.1	15960617
AT5G28640.1	KRG96154	AT3G52910.1	15960617
AT5G28640.1	KRH30830	AT3G52910.1	15960617
AT5G28640.1	KRH32671	AT3G52910.1	15960617
AT5G28640.1	KRH67865	AT3G52910.1	15960617
AT5G28640.1	KRG88736	AT4G37740.1	15326298
AT5G28640.1	KRG88739	AT4G37740.1	15326298
AT5G28640.1	KRH05542	AT4G37740.1	15326298
AT5G28640.1	KRH05543	AT4G37740.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34114	Soybean	nucleus	94.34	94.34
Solyc04g009820.2.1	Tomato	nucleus	68.87	70.19
KRG97010	Soybean	nucleus	68.87	69.52
VIT_14s0081g00200.t01	Wine grape	nucleus	72.64	69.06
Bra036131.1-P	Field mustard	nucleus	65.57	68.47
PGSC0003DMT400065405	Potato	nucleus	68.87	68.22
Bra020616.1-P	Field mustard	nucleus	65.57	68.14
Bra010002.1-P	Field mustard	nucleus	65.09	67.98
CDY33883	Canola	nucleus	65.57	67.8
CDY05600	Canola	nucleus	65.09	66.99
AT5G28640.1	Thale cress	nucleus	65.57	66.19
PGSC0003DMT400002573	Potato	nucleus	67.92	64.57
CDY57020	Canola	nucleus	61.79	64.53
CDY00027	Canola	nucleus	61.79	64.53
Solyc11g006230.1.1	Tomato	nucleus	66.98	63.96
GSMUA_Achr10P...	Banana	nucleus	54.72	54.21
KRH68767	Soybean	cytosol	62.74	51.75
GSMUA_Achr8P20680_001	Banana	nucleus	52.83	51.61
CDX86202	Canola	endoplasmic reticulum, extracellular	23.11	51.04
TraesCS4B01G064000.1	Wheat	nucleus	50.0	47.11
TraesCS4D01G062900.1	Wheat	nucleus	49.53	46.67
TraesCS4A01G250600.1	Wheat	nucleus	49.06	46.02
GSMUA_Achr9P10760_001	Banana	cytosol	51.89	45.83
EER90925	Sorghum	nucleus	48.58	45.78
Os03t0733600-01	Rice	nucleus	48.11	44.93
Zm00001d033905_P001	Maize	nucleus	46.23	43.17
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	47.64	41.06
KRH06396	Soybean	cytosol	36.32	36.67
KRH47827	Soybean	cytosol	35.85	35.68
KRH44608	Soybean	cytosol	24.06	31.29
KRH53598	Soybean	nucleus	25.94	28.21

Protein Annotations

EMBL:ACUP02012766	EnsemblPlants:KRG92707	EnsemblPlantsGene:GLYMA_20G226500	EntrezGene:100812917	GO:GO:0003674	GO:GO:0003713
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506
GO:GO:1903508	InterPro:SS18_fam	PANTHER:PTHR23107	PANTHER:PTHR23107:SF6	PFAM:PF05030	ProteinID:KRG92707
ProteinID:KRG92707.1	SEG:seg	UniParc:UPI00023DBDA4	UniProt:I1NIS0	MapMan:15.5.52.2	:

Description

hypothetical protein

Coordinates

chr20:+:46054807..46058525

Molecular Weight (calculated)

22816.8 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.650

Length

212 amino acids

Sequence
(BLAST)

001: MQQHLMQMQP IMAAYYPNNV TTDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQSRLQR NLMYLAAIAD SQPQPSPMPG QYPSSGLMQQ GAHYMQAQQA
101: QQMSQQQLMA SRSSLLYSQQ PFSVLQQQQG MHSQLGMSSN GSQGLHMLQT EATNVGGNAT IGTGGRFPDF VRIASGKQDI GSSGEGRGGS SSGHSGDGGE
201: TLNYLKAAGD GN

Best Arabidopsis Sequence Match ( AT5G28640.1 )
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN

Arabidopsis Description

GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.