Factsheet for Bra010002.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000575.1-P
Bra001532.1-P
Bra006956.1-P
Bra011781.1-P
Bra017851.1-P
Bra019640.1-P
Bra021521.1-P
Bra027384.1-P
Bra028541.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28640.1	Bra000575.1-P	AT2G22840.1	15326298
AT5G28640.1	Bra001532.1-P	AT3G13960.1	15960617
AT5G28640.1	Bra021521.1-P	AT3G13960.1	15960617
AT5G28640.1	Bra027384.1-P	AT3G13960.1	15960617
AT5G28640.1	Bra006956.1-P	AT3G52910.1	15960617
AT5G28640.1	Bra019640.1-P	AT3G52910.1	15960617
AT5G28640.1	Bra028541.1-P	AT3G52910.1	15960617
AT5G28640.1	Bra011781.1-P	AT4G37740.1	15326298
AT5G28640.1	Bra017851.1-P	AT4G37740.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036131.1-P	Field mustard	nucleus	89.66	89.66
AT5G28640.1	Thale cress	nucleus	89.16	86.19
Bra020616.1-P	Field mustard	nucleus	82.76	82.35
Solyc04g009820.2.1	Tomato	nucleus	69.46	67.79
PGSC0003DMT400065405	Potato	nucleus	69.95	66.36
KRH34114	Soybean	nucleus	68.47	65.57
KRG92707	Soybean	nucleus	67.98	65.09
PGSC0003DMT400002573	Potato	nucleus	67.98	61.88
Solyc11g006230.1.1	Tomato	nucleus	65.52	59.91
KRG97010	Soybean	nucleus	60.59	58.57
CDX86202	Canola	endoplasmic reticulum, extracellular	26.11	55.21
GSMUA_Achr10P...	Banana	nucleus	54.19	51.4
VIT_07s0005g02950.t01	Wine grape	nucleus	56.16	50.89
GSMUA_Achr8P20680_001	Banana	nucleus	52.22	48.85
EER90925	Sorghum	nucleus	50.74	45.78
Os03t0733600-01	Rice	nucleus	50.25	44.93
TraesCS4B01G064000.1	Wheat	nucleus	48.77	44.0
Zm00001d033905_P001	Maize	nucleus	48.77	43.61
TraesCS4D01G062900.1	Wheat	nucleus	48.28	43.56
TraesCS4A01G250600.1	Wheat	nucleus	48.28	43.36
GSMUA_Achr9P10760_001	Banana	cytosol	51.23	43.33
KRH68767	Soybean	cytosol	54.19	42.8
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	48.28	39.84
Bra033281.1-P	Field mustard	nucleus	32.02	31.55
Bra032623.1-P	Field mustard	cytosol	30.54	30.54

Protein Annotations

EnsemblPlants:Bra010002.1	EnsemblPlants:Bra010002.1-P	EnsemblPlantsGene:Bra010002	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508
InterPro:SS18_fam	PANTHER:PTHR23107	PANTHER:PTHR23107:SF6	PFAM:PF05030	SEG:seg	UniParc:UPI0000F065DF
UniProt:M4D0K4	MapMan:15.5.52.2	:	:	:	:

Description

AT5G28640 (E=7e-050) AN3, GIF, GIF1 | AN3 (ANGUSTIFOLIA 3); protein binding / transcription coactivator

Coordinates

chrA06:-:18576712..18578656

Molecular Weight (calculated)

21937.6 Da

IEP (calculated)

6.220

GRAVY (calculated)

-0.783

Length

203 amino acids

Sequence
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGLI QGEGASHYLQ
101: QQQATQQQQM TQQSLMAARS SMMYQQQQQP YATLQHQQLH HSQLGMSSSS GGGSSGLHIL QGEAGGFHEF GRGKPEMGSG EGRGGSSGDG GETLYLKSSD
201: DGN

Best Arabidopsis Sequence Match ( AT5G28640.1 )
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN

Arabidopsis Description

GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.