Factsheet for Bra028541.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010002.1-P
Bra020616.1-P
Bra036131.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52910.1	Bra010002.1-P	AT5G28640.1	15960617
AT3G52910.1	Bra020616.1-P	AT5G28640.1	15960617
AT3G52910.1	Bra036131.1-P	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67545	Canola	nucleus	97.81	98.35
CDY13333	Canola	nucleus	96.17	96.17
Bra006956.1-P	Field mustard	nucleus	84.97	81.41
AT3G52910.1	Thale cress	nucleus	82.79	79.74
Bra023066.1-P	Field mustard	nucleus	65.3	64.95
Bra005268.1-P	Field mustard	nucleus	68.31	64.43
Bra017240.1-P	Field mustard	nucleus	63.39	64.09
Bra019640.1-P	Field mustard	nucleus	78.42	53.35
KRH30830	Soybean	nucleus	46.45	50.75
KRH32671	Soybean	nucleus	45.36	49.4
KRH67865	Soybean	nucleus	50.82	48.44
KRG96154	Soybean	nucleus	51.09	48.2
Solyc09g009200.1.1	Tomato	nucleus	47.27	45.41
VIT_08s0007g03760.t01	Wine grape	nucleus	50.27	44.44
PGSC0003DMT400072628	Potato	nucleus	45.9	42.97
Solyc10g083510.1.1	Tomato	nucleus	45.63	42.93
GSMUA_Achr3P22790_001	Banana	nucleus	43.17	40.31
GSMUA_Achr8P07650_001	Banana	extracellular	33.61	38.92
Bra022667.1-P	Field mustard	nucleus	24.59	25.94
Bra017851.1-P	Field mustard	nucleus	26.23	21.48
Bra011781.1-P	Field mustard	nucleus	25.68	20.84
Bra019244.1-P	Field mustard	nucleus	21.04	20.53
Bra013767.1-P	Field mustard	nucleus	19.95	19.68
Bra001532.1-P	Field mustard	nucleus	19.13	19.28
Bra000575.1-P	Field mustard	nucleus	27.05	19.11
Bra027384.1-P	Field mustard	nucleus	19.95	18.67
Bra039334.1-P	Field mustard	nucleus	20.77	17.84
Bra015184.1-P	Field mustard	nucleus	18.58	17.0
Bra021521.1-P	Field mustard	cytosol	16.12	14.36

Protein Annotations

MapMan:15.5.52.1	EnsemblPlantsGene:Bra028541	EnsemblPlants:Bra028541.1	EnsemblPlants:Bra028541.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M4EIC6	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF39	SMART:SM00951	UniParc:UPI0002543460	InterPro:WRC_dom	SEG:seg	:

Description

AT3G52910 (E=2e-120) AtGRF4 | AtGRF4 (GROWTH-REGULATING FACTOR 4); transcription activator

Coordinates

chrA02:-:969253..971390

Molecular Weight (calculated)

40793.3 Da

IEP (calculated)

8.815

GRAVY (calculated)

-0.796

Length

366 amino acids

Sequence
(BLAST)

001: MDLQLKQWRS QQQNESEEQS SATKISNFFL DQIRSQTASS AAAALPLFVP EPTSSTSVSC FSPNTSSSRF LKMGNFFSLA QWQELELQAL IYRYMLAGAS
101: VPQELLLPIK KSLFQSPLNF LHHPQQQNFP HHQPWYWGRG AMDPEPGRCK RTDGKKWRCS RDVVGGHKYC DRHIHPGRNR NRSRKPVETA KPATTTAASS
201: FVLGEDLGHG PNNIFFSSDS SHSSTKHLHL TSHQSCSSGM KQESNKKRPY EAHSGLRSDD GNTLRPFFDD WPRSSDSTSS PMSSSNCHLS ISMPGNTSSD
301: VSLKLSTGDK VEEANNNERE QQQNMNWWSS GGNHHNMGGP LAEALRSASS TSSVLHQMGI SAQVFH

Best Arabidopsis Sequence Match ( AT3G52910.1 )
(BLAST)

001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH

Arabidopsis Description

GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.