Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52910.1 | CDX86202 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY00027 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY05600 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY33883 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY57020 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028541.1-P | Field mustard | nucleus | 98.35 | 97.81 |
| CDY13333 | Canola | nucleus | 96.7 | 96.17 |
| CDX78132 | Canola | nucleus | 86.81 | 83.82 |
| CDX73595 | Canola | nucleus | 86.81 | 82.94 |
| AT3G52910.1 | Thale cress | nucleus | 82.97 | 79.47 |
| CDX76249 | Canola | nucleus | 78.85 | 70.17 |
| CDX84560 | Canola | nucleus | 66.48 | 65.76 |
| CDX79674 | Canola | nucleus | 66.21 | 65.49 |
| CDX75039 | Canola | nucleus | 68.68 | 64.94 |
| CDY43721 | Canola | nucleus | 63.19 | 64.79 |
| CDX84126 | Canola | nucleus | 68.13 | 63.27 |
| CDY66284 | Canola | nucleus | 78.85 | 53.35 |
| KRH30830 | Soybean | nucleus | 46.7 | 50.75 |
| KRH32671 | Soybean | nucleus | 45.6 | 49.4 |
| KRH67865 | Soybean | nucleus | 50.82 | 48.18 |
| KRG96154 | Soybean | nucleus | 51.1 | 47.94 |
| Solyc09g009200.1.1 | Tomato | nucleus | 47.8 | 45.67 |
| VIT_08s0007g03760.t01 | Wine grape | nucleus | 50.55 | 44.44 |
| PGSC0003DMT400072628 | Potato | nucleus | 46.43 | 43.22 |
| Solyc10g083510.1.1 | Tomato | nucleus | 46.15 | 43.19 |
| GSMUA_Achr3P22790_001 | Banana | nucleus | 43.41 | 40.31 |
| GSMUA_Achr8P07650_001 | Banana | extracellular | 34.07 | 39.24 |
| CDY55116 | Canola | nucleus | 22.8 | 29.43 |
| CDY51791 | Canola | nucleus | 24.73 | 27.52 |
| CDY66422 | Canola | nucleus | 23.35 | 27.16 |
| CDY28823 | Canola | nucleus | 24.73 | 25.94 |
| CDY70432 | Canola | nucleus | 15.38 | 23.05 |
| CDY29584 | Canola | nucleus | 25.55 | 22.79 |
| CDX83200 | Canola | nucleus | 23.9 | 22.08 |
| CDX72654 | Canola | nucleus | 26.1 | 21.49 |
| CDY72447 | Canola | nucleus, plastid | 19.78 | 20.93 |
| CDY03485 | Canola | nucleus | 19.78 | 20.69 |
| CDX75672 | Canola | nucleus | 25.55 | 20.62 |
| CDY10989 | Canola | nucleus | 21.15 | 20.48 |
| CDX69322 | Canola | nucleus | 25.82 | 20.39 |
| CDX92617 | Canola | nucleus | 21.98 | 19.66 |
| CDX82503 | Canola | nucleus | 19.23 | 19.13 |
| CDY55209 | Canola | nucleus | 20.33 | 18.97 |
| CDX97531 | Canola | nucleus | 20.05 | 18.81 |
| CDX75742 | Canola | nucleus | 18.41 | 18.36 |
| CDY39081 | Canola | nucleus | 20.05 | 18.34 |
| CDX71979 | Canola | nucleus | 19.23 | 18.18 |
| CDY37044 | Canola | nucleus | 21.15 | 17.62 |
| CDY33407 | Canola | nucleus | 18.96 | 17.25 |
| CDY27382 | Canola | nucleus | 20.88 | 17.12 |
| CDY21475 | Canola | nucleus | 23.08 | 16.9 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.27 | 0.59 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078BSI3 | EnsemblPlants:CDX67545 | ProteinID:CDX67545 | ProteinID:CDX67545.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00098678001 | InterPro:Gln-Leu-Gln_QLQ |
| InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 | PFscan:PS51667 |
| PANTHER:PTHR31602 | PANTHER:PTHR31602:SF39 | SMART:SM00951 | UniParc:UPI0004EEDA08 | InterPro:WRC_dom | SEG:seg |
Description
BnaA07g15850D
Coordinates
chrLK031787:-:875898..878011
Molecular Weight (calculated)
40502.9 Da
IEP (calculated)
8.404
GRAVY (calculated)
-0.763
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLQLKQWRS QQQNESEEQS SATKISNFFL DQIRSQTASS AAAALPLFVA EPTSSTSVSC FSPNTSSSRF LKMGNFFSLA QWQELELQAL IYRYMLAGAS
101: VPQELLLPIK KSLFQSPLNF LHHPQQQNFP HHQPWYWGRG AMDPEPGRCK RTDGKKWRCS RDVVGGHKYC DRHIHRGRNR SRKPVETAKP ATTTAASSFV
201: LGEDLGHGPN SLFFSSDSSH SSTKHLHLTS HQSCSSGMKQ ESNKKRPYEA HSGLRSDDGN TLRPFFDDWP RSSDSTSSPM SSSNCHLSIS MPGNTSSDVS
301: LKLSTGDEVE EASNNEREQQ QNMNWWSSGG NHHNMGGPLA EALRSASSTS SVLHQMGISA QVFH
101: VPQELLLPIK KSLFQSPLNF LHHPQQQNFP HHQPWYWGRG AMDPEPGRCK RTDGKKWRCS RDVVGGHKYC DRHIHRGRNR SRKPVETAKP ATTTAASSFV
201: LGEDLGHGPN SLFFSSDSSH SSTKHLHLTS HQSCSSGMKQ ESNKKRPYEA HSGLRSDDGN TLRPFFDDWP RSSDSTSSPM SSSNCHLSIS MPGNTSSDVS
301: LKLSTGDEVE EASNNEREQQ QNMNWWSSGG NHHNMGGPLA EALRSASSTS SVLHQMGISA QVFH
001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
Arabidopsis Description
GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.