Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002573 | |
| PGSC0003DMT400065405 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52910.1 | PGSC0003DMT400002573 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | PGSC0003DMT400065405 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g083510.1.1 | Tomato | nucleus | 92.84 | 93.32 |
| KRH30830 | Soybean | nucleus | 46.04 | 53.73 |
| KRG96154 | Soybean | nucleus | 52.43 | 52.84 |
| KRH67865 | Soybean | nucleus | 51.41 | 52.34 |
| VIT_08s0007g03760.t01 | Wine grape | nucleus | 54.48 | 51.45 |
| KRH32671 | Soybean | nucleus | 42.97 | 50.0 |
| CDX79674 | Canola | nucleus | 44.25 | 47.01 |
| CDX67545 | Canola | nucleus | 43.22 | 46.43 |
| CDX84560 | Canola | nucleus | 43.48 | 46.2 |
| Bra023066.1-P | Field mustard | nucleus | 43.22 | 45.92 |
| Bra028541.1-P | Field mustard | nucleus | 42.97 | 45.9 |
| AT2G36400.1 | Thale cress | nucleus | 46.55 | 45.73 |
| CDY13333 | Canola | nucleus | 42.46 | 45.36 |
| CDX75039 | Canola | nucleus | 44.5 | 45.19 |
| Bra005268.1-P | Field mustard | nucleus | 44.76 | 45.1 |
| CDY43721 | Canola | nucleus | 40.92 | 45.07 |
| CDX84126 | Canola | nucleus | 44.76 | 44.64 |
| Bra017240.1-P | Field mustard | nucleus | 41.18 | 44.48 |
| AT3G52910.1 | Thale cress | nucleus | 42.71 | 43.95 |
| CDX78132 | Canola | nucleus | 42.2 | 43.77 |
| GSMUA_Achr3P22790_001 | Banana | nucleus | 43.73 | 43.62 |
| CDX73595 | Canola | nucleus | 42.2 | 43.31 |
| Bra006956.1-P | Field mustard | nucleus | 41.94 | 42.93 |
| GSMUA_Achr8P07650_001 | Banana | extracellular | 34.27 | 42.41 |
| CDX76249 | Canola | nucleus | 39.13 | 37.41 |
| PGSC0003DMT400009997 | Potato | nucleus | 11.25 | 36.07 |
| CDY66284 | Canola | nucleus | 39.13 | 28.44 |
| Bra019640.1-P | Field mustard | nucleus | 38.87 | 28.25 |
| PGSC0003DMT400047580 | Potato | nucleus | 20.72 | 22.95 |
| PGSC0003DMT400079338 | Potato | nucleus | 18.41 | 22.64 |
| PGSC0003DMT400033246 | Potato | nucleus | 24.04 | 22.38 |
| PGSC0003DMT400075563 | Potato | nucleus | 19.95 | 22.29 |
| PGSC0003DMT400033847 | Potato | nucleus | 14.07 | 20.37 |
| PGSC0003DMT400012666 | Potato | mitochondrion, nucleus | 30.43 | 19.93 |
| PGSC0003DMT400008352 | Potato | nucleus | 21.74 | 18.93 |
| PGSC0003DMT400055151 | Potato | nucleus | 28.9 | 18.86 |
| PGSC0003DMT400031893 | Potato | nucleus | 19.95 | 18.48 |
Protein Annotations
| EntrezGene:102584006 | MapMan:15.5.52.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 |
| InterPro:GRF | InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | UniProt:M1CQP2 | PFAM:PF08879 |
| PFAM:PF08880 | EnsemblPlantsGene:PGSC0003DMG400028259 | PGSC:PGSC0003DMG400028259 | EnsemblPlants:PGSC0003DMT400072628 | PFscan:PS51666 | PFscan:PS51667 |
| PANTHER:PTHR31602 | PANTHER:PTHR31602:SF12 | SMART:SM00951 | UniParc:UPI00029633AE | InterPro:WRC_dom | RefSeq:XP_006339314.1 |
| SEG:seg | : | : | : | : | : |
Description
GRF domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400028259]
Coordinates
chr10:+:55687381..55691676
Molecular Weight (calculated)
42650.6 Da
IEP (calculated)
8.605
GRAVY (calculated)
-0.612
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFNLKQWSN PAEERSFESE NQESPTKFPR LLLDFHSVSS DSASAAALPL FVSEPTTTCA KLMSDSTTTV TTKFPRIGSG GGYFSLAQWQ ELELQSLIFR
101: HFVAGAPVPS ELLHLVKKSI IASSPLPPSY YFAHPFQQYP HYQQALMQSG YWGRAAMDPE PGRCRRTDGK KWRCSRDVVA GQKYCERHVH RGRSRSRKPV
201: EIPTPANNGS KNNNNTVSHH QAFGKMVGHA GAGAPQFSLS GHSPSTNAPF HLNQRPIKGP PQEVLQKDVS IGDGKSSSGQ ILRHFFDDWP RQQQLQEGDN
301: AATSLSISMP GGGGNTSSDF SLKLSTGNDY DLGTQVSNVE QSTWGTSHHQ VASMGGPLAE ALRSSMTNSS PTSVLHELAR GSTSEASYIS T
101: HFVAGAPVPS ELLHLVKKSI IASSPLPPSY YFAHPFQQYP HYQQALMQSG YWGRAAMDPE PGRCRRTDGK KWRCSRDVVA GQKYCERHVH RGRSRSRKPV
201: EIPTPANNGS KNNNNTVSHH QAFGKMVGHA GAGAPQFSLS GHSPSTNAPF HLNQRPIKGP PQEVLQKDVS IGDGKSSSGQ ILRHFFDDWP RQQQLQEGDN
301: AATSLSISMP GGGGNTSSDF SLKLSTGNDY DLGTQVSNVE QSTWGTSHHQ VASMGGPLAE ALRSSMTNSS PTSVLHELAR GSTSEASYIS T
001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
Arabidopsis Description
GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.