Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010002.1-P | |
| Bra020616.1-P | |
| Bra036131.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52910.1 | Bra010002.1-P | AT5G28640.1 | 15960617 |
| AT3G52910.1 | Bra020616.1-P | AT5G28640.1 | 15960617 |
| AT3G52910.1 | Bra036131.1-P | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028541.1-P | Field mustard | nucleus | 81.41 | 84.97 |
| AT3G52910.1 | Thale cress | nucleus | 83.51 | 83.95 |
| Bra023066.1-P | Field mustard | nucleus | 64.4 | 66.85 |
| Bra017240.1-P | Field mustard | nucleus | 62.04 | 65.47 |
| Bra005268.1-P | Field mustard | nucleus | 66.23 | 65.21 |
| Bra019640.1-P | Field mustard | nucleus | 80.37 | 57.06 |
| CDY66284 | Canola | nucleus | 80.1 | 56.88 |
| KRH32671 | Soybean | nucleus | 43.19 | 49.11 |
| KRH30830 | Soybean | nucleus | 42.93 | 48.96 |
| KRH67865 | Soybean | nucleus | 48.43 | 48.18 |
| KRG96154 | Soybean | nucleus | 48.17 | 47.42 |
| VIT_08s0007g03760.t01 | Wine grape | nucleus | 50.0 | 46.14 |
| Solyc09g009200.1.1 | Tomato | nucleus | 44.5 | 44.62 |
| Solyc10g083510.1.1 | Tomato | nucleus | 43.46 | 42.67 |
| PGSC0003DMT400072628 | Potato | nucleus | 42.93 | 41.94 |
| GSMUA_Achr3P22790_001 | Banana | nucleus | 40.05 | 39.03 |
| GSMUA_Achr8P07650_001 | Banana | extracellular | 31.41 | 37.97 |
| Bra022667.1-P | Field mustard | nucleus | 23.3 | 25.65 |
| Bra017851.1-P | Field mustard | nucleus | 25.39 | 21.7 |
| Bra019244.1-P | Field mustard | nucleus | 20.94 | 21.33 |
| Bra011781.1-P | Field mustard | nucleus | 25.13 | 21.29 |
| Bra013767.1-P | Field mustard | nucleus | 20.16 | 20.75 |
| Bra000575.1-P | Field mustard | nucleus | 26.7 | 19.69 |
| Bra027384.1-P | Field mustard | nucleus | 19.9 | 19.44 |
| Bra001532.1-P | Field mustard | nucleus | 18.32 | 19.28 |
| Bra039334.1-P | Field mustard | nucleus | 18.59 | 16.67 |
| Bra015184.1-P | Field mustard | nucleus | 17.02 | 16.25 |
| Bra021521.1-P | Field mustard | cytosol | 15.97 | 14.84 |
Protein Annotations
| MapMan:15.5.52.1 | EnsemblPlantsGene:Bra006956 | EnsemblPlants:Bra006956.1 | EnsemblPlants:Bra006956.1-P | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 |
| InterPro:IPR014978 | UniProt:M4CRW4 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 | PFscan:PS51667 |
| PANTHER:PTHR31602 | PANTHER:PTHR31602:SF39 | SMART:SM00951 | UniParc:UPI0002542EAC | InterPro:WRC_dom | SEG:seg |
Description
AT3G52910 (E=2e-124) AtGRF4 | AtGRF4 (GROWTH-REGULATING FACTOR 4); transcription activator
Coordinates
chrA09:-:26478702..26480861
Molecular Weight (calculated)
42866.3 Da
IEP (calculated)
7.301
GRAVY (calculated)
-0.859
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLQLKQWRS QQQNESEEQG SATKMSSFFF DQIQSQTETS AAALPLFVPE PTSSSSFSCF TPDSSSSSTR HLKMGNFFSL AQWQELELQA LIYRYMLACA
101: SFPQELLLPI KKSLFHQSPL NFLQHPLQHN FPHHQASWYW GRGAMDPEPG RCKRTDGKKW RCSRDVVASY KYCDRHIHRG RNRSRKPVET TAKTATTNAA
201: TNAASSFVLG EELGHGPNNL FFSSGSSHHS SPHLHLNSHQ SCPSDMNQES NNNKRPYETR SGFSNGRSDD GHILRPFFDD WPRSSDSTSS PLTSSTCHLS
301: ISMPGNPPSD VSLKLSTGNE EEEEANMRNN NNNEREQQQN MNWWSSGGNH NNMGGPLAEA LRSASSTSSV LQQMGISTQV FH
101: SFPQELLLPI KKSLFHQSPL NFLQHPLQHN FPHHQASWYW GRGAMDPEPG RCKRTDGKKW RCSRDVVASY KYCDRHIHRG RNRSRKPVET TAKTATTNAA
201: TNAASSFVLG EELGHGPNNL FFSSGSSHHS SPHLHLNSHQ SCPSDMNQES NNNKRPYETR SGFSNGRSDD GHILRPFFDD WPRSSDSTSS PLTSSTCHLS
301: ISMPGNPPSD VSLKLSTGNE EEEEANMRNN NNNEREQQQN MNWWSSGGNH NNMGGPLAEA LRSASSTSSV LQQMGISTQV FH
001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
Arabidopsis Description
GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.