Factsheet for Bra021521.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010002.1-P
Bra020616.1-P
Bra036131.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13960.1	Bra010002.1-P	AT5G28640.1	15960617
AT3G13960.1	Bra020616.1-P	AT5G28640.1	15960617
AT3G13960.1	Bra036131.1-P	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39081	Canola	nucleus	86.86	89.7
CDX71979	Canola	nucleus	81.02	86.49
Bra027384.1-P	Field mustard	nucleus	71.29	74.94
AT3G13960.1	Thale cress	nucleus	71.29	73.8
Bra001532.1-P	Field mustard	nucleus	61.8	69.97
VIT_09s0002g01350.t01	Wine grape	nucleus	33.33	37.74
KRH47599	Soybean	nucleus	30.66	36.52
KRH06183	Soybean	nucleus	30.66	35.0
PGSC0003DMT400033847	Potato	nucleus	21.41	32.59
Zm00001d018260_P001	Maize	mitochondrion	27.25	29.79
Os02t0776900-01	Rice	mitochondrion, nucleus	27.98	28.97
TraesCS6A01G335900.1	Wheat	nucleus	27.98	28.12
HORVU6Hr1G081210.1	Barley	nucleus	28.22	28.09
TraesCS6B01G366700.1	Wheat	nucleus	27.98	28.05
TraesCS6D01G315700.1	Wheat	nucleus	27.98	27.78
KXG31209	Sorghum	mitochondrion, nucleus	26.76	27.78
Os06t0204800-00	Rice	nucleus	20.19	27.57
Zm00001d052112_P001	Maize	mitochondrion, nucleus	25.79	26.43
OQU76020	Sorghum	mitochondrion, nucleus	21.41	26.04
HORVU7Hr1G034610.4	Barley	mitochondrion	18.98	24.92
TraesCS7A01G165600.1	Wheat	nucleus	18.25	24.27
TraesCS7D01G166400.1	Wheat	nucleus	18.73	24.06
TraesCS7B01G070200.1	Wheat	nucleus	18.49	24.05
Zm00001d037117_P001	Maize	mitochondrion, nucleus	21.41	23.91
Zm00001d000238_P001	Maize	nucleus	21.17	22.19
Bra022667.1-P	Field mustard	nucleus	15.33	18.16
Bra023066.1-P	Field mustard	nucleus	15.82	17.66
Bra005268.1-P	Field mustard	nucleus	16.3	17.27
Bra015184.1-P	Field mustard	nucleus	16.79	17.25
Bra039334.1-P	Field mustard	nucleus	17.03	16.43
Bra028541.1-P	Field mustard	nucleus	14.36	16.12
Bra006956.1-P	Field mustard	nucleus	14.84	15.97
Bra017240.1-P	Field mustard	nucleus	13.38	15.19
Bra019244.1-P	Field mustard	nucleus	12.41	13.6
Bra000575.1-P	Field mustard	nucleus	16.79	13.32
Bra017851.1-P	Field mustard	nucleus	14.36	13.2
Bra011781.1-P	Field mustard	nucleus	13.87	12.64
Bra013767.1-P	Field mustard	nucleus	11.19	12.4
Bra019640.1-P	Field mustard	nucleus	15.57	11.9

Protein Annotations

MapMan:15.5.52.1	EnsemblPlantsGene:Bra021521	EnsemblPlants:Bra021521.1	EnsemblPlants:Bra021521.1-P	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:IPR014977	UniProt:M4DYC5
PFAM:PF08879	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF38	UniParc:UPI000254455D	InterPro:WRC_dom
SEG:seg	:	:	:	:	:

Description

AT3G13960 (E=2e-119) AtGRF5 | AtGRF5 (GROWTH-REGULATING FACTOR 5); transcription activator

Coordinates

chrA01:-:24796724..24800141

Molecular Weight (calculated)

46769.0 Da

IEP (calculated)

7.777

GRAVY (calculated)

-0.879

Length

411 amino acids

Sequence
(BLAST)

001: MVSGVPVPPD LIFSIRRSLD SFLVSRLLPH QPLGWGCYQM GFGRKQDPEP GRCRRTDGKK WRCSREAHPD SKYCEKHMHR GRNRAKKSID QSQTAAPLTS
101: PSLSFPNNIP SPTLSSSTTT TTTTTTTYSA SSSSPLAEAY SNSNRFGVGS SNNRGYFNNH SFDYPYPSTP PKQQQQQQQT LSHVSALSLH QNTSTPQLNV
201: FASATDHKDF RYFQGIGERV GVGERTFFPE ASRSFQDSPY HHQQPLATVV DNPYDCTTDH KFDHHHTYSS SSQHHHHDQD HRQQQQCFVL GADMFNKPTR
301: TILENTSRQD YLNQEEEEKD SSDTKKSLHH FFGEEWTQNK NSSDSWLDLS SQSRLDTVIV DLDWFGDLHV KFWLILIGNR RKQTKPTEVA KLTHVLASEA
401: AQMVVEPILN L

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.