CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86202
CDY00027
CDY05600
CDY33883
CDY57020

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13960.1	CDX86202	AT5G28640.1	15960617
AT3G13960.1	CDY00027	AT5G28640.1	15960617
AT3G13960.1	CDY05600	AT5G28640.1	15960617
AT3G13960.1	CDY33883	AT5G28640.1	15960617
AT3G13960.1	CDY57020	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39081	Canola	nucleus	95.32	92.21
CDX97531	Canola	nucleus	83.12	82.47
CDY55209	Canola	nucleus	83.12	82.05
AT3G13960.1	Thale cress	nucleus	84.16	81.61
Bra021521.1-P	Field mustard	cytosol	86.49	81.02
CDX75742	Canola	nucleus	73.51	77.53
CDX82503	Canola	nucleus	73.25	77.05
VIT_09s0002g01350.t01	Wine grape	nucleus	39.74	42.15
KRH47599	Soybean	nucleus	37.4	41.74
KRH06183	Soybean	nucleus	36.88	39.44
Os06t0204800-00	Rice	nucleus	26.75	34.22
Zm00001d018260_P001	Maize	mitochondrion	32.73	33.51
Os02t0776900-01	Rice	mitochondrion, nucleus	34.29	33.25
TraesCS6A01G335900.1	Wheat	nucleus	35.06	33.01
TraesCS6B01G366700.1	Wheat	nucleus	35.06	32.93
HORVU6Hr1G081210.1	Barley	nucleus	35.06	32.69
TraesCS6D01G315700.1	Wheat	nucleus	35.06	32.61
PGSC0003DMT400033847	Potato	nucleus	22.34	31.85
KXG31209	Sorghum	mitochondrion, nucleus	32.73	31.82
OQU76020	Sorghum	mitochondrion, nucleus	27.27	31.07
CDY70432	Canola	nucleus	19.48	30.86
HORVU7Hr1G034610.4	Barley	mitochondrion	24.94	30.67
Zm00001d052112_P001	Maize	mitochondrion, nucleus	31.69	30.42
TraesCS7A01G165600.1	Wheat	nucleus	23.9	29.77
TraesCS7B01G070200.1	Wheat	nucleus	24.16	29.43
TraesCS7D01G166400.1	Wheat	nucleus	24.42	29.38
Zm00001d037117_P001	Maize	mitochondrion, nucleus	27.27	28.53
Zm00001d000238_P001	Maize	nucleus	27.53	27.04
CDY55116	Canola	nucleus	18.44	25.18
CDY66422	Canola	nucleus	18.96	23.32
CDY51791	Canola	nucleus	19.48	22.94
CDY28823	Canola	nucleus	19.74	21.9
CDY33407	Canola	nucleus	22.08	21.25
CDX84126	Canola	nucleus	20.78	20.41
CDX84560	Canola	nucleus	19.48	20.38
CDX75039	Canola	nucleus	20.0	20.0
CDX79674	Canola	nucleus	18.96	19.84
CDX83200	Canola	nucleus	20.0	19.54
CDY13333	Canola	nucleus	18.44	19.4
CDX78132	Canola	nucleus	18.96	19.36
CDX67545	Canola	nucleus	18.18	19.23
CDX73595	Canola	nucleus	18.96	19.16
CDY43721	Canola	nucleus	17.4	18.87
CDY29584	Canola	nucleus	19.48	18.38
CDX76249	Canola	nucleus	18.7	17.6
CDY10989	Canola	nucleus	16.62	17.02
CDX72654	Canola	nucleus	19.48	16.97
CDY37044	Canola	nucleus	18.96	16.7
CDY27382	Canola	nucleus	18.96	16.44
CDX75672	Canola	nucleus	19.22	16.41
CDY21475	Canola	nucleus	21.04	16.3
CDY72447	Canola	nucleus, plastid	14.55	16.28
CDY03485	Canola	nucleus	14.55	16.09
CDX69322	Canola	nucleus	19.22	16.05
CDX92617	Canola	nucleus	16.62	15.72
CDY66284	Canola	nucleus	18.7	13.38
CDX76250	Canola	cytosol, golgi, mitochondrion, nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.52.1	GO:A0A078C738	EnsemblPlants:CDX71979	ProteinID:CDX71979	ProteinID:CDX71979.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF	EnsemblPlantsGene:GSBRNA2T00155749001	InterPro:Gln-Leu-Gln_QLQ
InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF38	SMART:SM00951	UniParc:UPI0004EE543C	InterPro:WRC_dom	SEG:seg

Description

BnaC08g28950D

Coordinates

chrLK031795:+:1611641..1613721

Molecular Weight (calculated)

43993.5 Da

IEP (calculated)

7.819

GRAVY (calculated)

-1.051

Length

385 amino acids

Sequence
(BLAST)

001: MMSLSGNSGR PIGRPPFTPT QWQELEHQAL IYKYMVSGVP VPPDLIFSIR RSLDSSLVSR LLPHQPLGWG CYQMGFGRKQ DPEPGRCRRT DGKKWRCSRE
101: AHPDSKYCEK HMHRGRNRAK KSIDQSQTTA PLTSPSLSFP NNIPSPTLSS SSTTYYASSS SPLAEAYSNS NRFGVGSSNS RGYFNNHSFD YPYPSTPPKQ
201: QQQQQQTLSH VSALSLHQNT STPQLNVLAS ATDHKDFRYF EGIGERVGVG ERTFFPEASR SFQDSPYHHH KQPLATVVDD PYDYTTDNKF DHHHTYSSQH
301: HHHNDQDHRQ QQCFVLGADM FNKPTRTVLE YTSRQDHLNQ EEEEKDSSDT KKSLHHFFGE EWTQNKNSSD SWLDLSSHSR LDTGM

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.