CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86202
CDY00027
CDY05600
CDY33883
CDY57020

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52910.1	CDX86202	AT5G28640.1	15960617
AT3G52910.1	CDY00027	AT5G28640.1	15960617
AT3G52910.1	CDY05600	AT5G28640.1	15960617
AT3G52910.1	CDY33883	AT5G28640.1	15960617
AT3G52910.1	CDY57020	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76250	Canola	cytosol, golgi, mitochondrion, nucleus	31.23	98.82
CDX76249	Canola	nucleus	65.61	86.31
CDX73595	Canola	nucleus	57.06	80.58
Bra006956.1-P	Field mustard	nucleus	56.88	80.1
CDX78132	Canola	nucleus	55.95	79.84
CDX67545	Canola	nucleus	53.35	78.85
CDY13333	Canola	nucleus	53.53	78.69
AT3G52910.1	Thale cress	nucleus	54.65	77.37
CDX84560	Canola	nucleus	43.49	63.59
CDX79674	Canola	nucleus	43.31	63.32
CDX75039	Canola	nucleus	44.42	62.08
CDY43721	Canola	nucleus	40.52	61.41
CDX84126	Canola	nucleus	44.61	61.22
KRH30830	Soybean	nucleus	30.48	48.96
KRH32671	Soybean	nucleus	30.11	48.21
KRH67865	Soybean	nucleus	33.09	46.35
KRG96154	Soybean	nucleus	33.09	45.88
VIT_08s0007g03760.t01	Wine grape	nucleus	32.9	42.75
Solyc09g009200.1.1	Tomato	nucleus	29.74	41.99
Solyc10g083510.1.1	Tomato	nucleus	28.81	39.85
PGSC0003DMT400072628	Potato	nucleus	28.44	39.13
GSMUA_Achr3P22790_001	Banana	nucleus	27.51	37.76
GSMUA_Achr8P07650_001	Banana	extracellular	22.12	37.66
CDY55116	Canola	nucleus	15.24	29.08
CDY51791	Canola	nucleus	16.17	26.61
CDY66422	Canola	nucleus	15.24	26.2
CDY28823	Canola	nucleus	16.17	25.07
CDY70432	Canola	nucleus	10.59	23.46
CDX83200	Canola	nucleus	16.17	22.08
CDY29584	Canola	nucleus	16.73	22.06
CDY72447	Canola	nucleus, plastid	13.94	21.8
CDY03485	Canola	nucleus	13.94	21.55
CDX72654	Canola	nucleus	17.29	21.04
CDY10989	Canola	nucleus	14.68	21.01
CDX92617	Canola	nucleus	15.24	20.15
CDX82503	Canola	nucleus	13.38	19.67
CDY55209	Canola	nucleus	14.13	19.49
CDX97531	Canola	nucleus	13.94	19.33
CDX75672	Canola	nucleus	16.17	19.29
CDY39081	Canola	nucleus	14.13	19.1
CDX69322	Canola	nucleus	16.36	19.09
CDX75742	Canola	nucleus	12.83	18.9
CDX71979	Canola	nucleus	13.38	18.7
CDY33407	Canola	nucleus	12.64	17.0
CDY21475	Canola	nucleus	15.06	16.3
CDY37044	Canola	nucleus	13.2	16.25
CDY27382	Canola	nucleus	13.2	15.99

Protein Annotations

MapMan:15.5.52.1	Gene3D:3.30.420.140	GO:A0A078JI06	UniProt:A0A078JI06	EnsemblPlants:CDY66284	ProteinID:CDY66284
ProteinID:CDY66284.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	EnsemblPlantsGene:GSBRNA2T00053319001	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
InterPro:IPR037027	HAMAP:MF_00651	PFAM:PF03652	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF39	InterPro:RNaseH-like_sf	SMART:SM00732	SMART:SM00951
SUPFAM:SSF53098	TIGRFAMs:TIGR00250	UniParc:UPI0004EED436	InterPro:WRC_dom	InterPro:YqgF	InterPro:YqgF/RNaseH-like_dom
InterPro:YqgF/RNaseH-like_dom_sf	SEG:seg	:	:	:	:

Description

BnaCnng50230DBnaCnng50230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JI06]

Coordinates

chrLK035182:+:12913..17115

Molecular Weight (calculated)

60930.9 Da

IEP (calculated)

8.671

GRAVY (calculated)

-0.638

Length

538 amino acids

Sequence
(BLAST)

001: MDLQLKQWRS QQQNESKEQS YATKMFNSFS HQIQSQTATS ATALPLFVPE PTTSSSFSCF SPDSSSSRLL KMGNLFSLAQ WQELELQALI YRYMLAGASV
101: PQELLLPIKK SLFHQSHLNF LHYPLQHNFP HHQPWYWGRG AVDPEPGRCK RTDGKKWRCS RNVVGSYKYC DRHIHRGRNR SRKPVETTTN AATNAASSFA
201: LGEKLGQGPD NLFFSSSSSH SSTQHLHLNS HQSCSSDMKQ ERNNNKRPYE AHNGRTNDGH ILRHFFEDWP QSSDSTSRRM SSSTCHLSIS MPTNASSDVS
301: LKLSTCNEEE EEANMRNNNN NEKEHQQSMI CWSSGENHHN MGGPLAEALR SASPTSGLLH QMGISTQEMK YVKPLRLLGD ALKTKVSVPG RFLGLDVGDK
401: YVGLAVSDPS NMIASPLSVL LRKKTNIDLM ATDFQNLVKS FSVSGLVVGY PFGKLNNVED VVTVNLFIEE LRKTEKLKDV KYTYWDERLS SKTVELMLKP
501: LKLHPVQEKT MLDKFAAVVI LQEYLDYANR YVNTEPEE

Best Arabidopsis Sequence Match ( AT3G52905.1 )
(BLAST)

001: MKYVKPLSLL GNALKTKVSV PGRFLGLDVG DKYVGLAISD PSNMVASPLS VLLRKKSNID LMATDFQNLV KAFSVSGLVV GYPFGKLNNV EDVVTVNLFI
101: EELRKTEKLK DVKYTYWDER LSSKTVELML KPLNLHPVQE KTMLDKLAAV VILQEYLDYA NRYVNTEPAE

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYR7]
SUBAcon: [mitochondrion,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.