CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66284	Canola	nucleus	98.82	31.23
CDX76249	Canola	nucleus	5.88	2.44
CDX83200	Canola	nucleus	1.18	0.51
CDY43721	Canola	nucleus	0.59	0.28
CDX67545	Canola	nucleus	0.59	0.27
CDY13333	Canola	nucleus	0.59	0.27
CDX84560	Canola	nucleus	0.59	0.27
CDX79674	Canola	nucleus	0.59	0.27
CDX78132	Canola	nucleus	0.59	0.27
CDX73595	Canola	nucleus	0.59	0.26
CDX75039	Canola	nucleus	0.59	0.26
CDX84126	Canola	nucleus	0.59	0.26
CDX72654	Canola	nucleus	0.59	0.23
KRH65240	Soybean	nucleus	0.0	0.0
CDY27382	Canola	nucleus	0.0	0.0
KRH76298	Soybean	nucleus	0.0	0.0
HORVU0Hr1G026650.1	Barley	mitochondrion, nucleus	0.0	0.0
GSMUA_Achr6P01270_001	Banana	nucleus	0.0	0.0
CDY72447	Canola	nucleus, plastid	0.0	0.0
CDY70432	Canola	nucleus	0.0	0.0
Zm00001d005387_P001	Maize	nucleus	0.0	0.0
CDY66422	Canola	nucleus	0.0	0.0
Zm00001d014421_P001	Maize	cytosol	0.0	0.0
CDY55209	Canola	nucleus	0.0	0.0
CDY55116	Canola	nucleus	0.0	0.0
CDY51791	Canola	nucleus	0.0	0.0
Zm00001d042010_P001	Maize	nucleus	0.0	0.0
CDY39081	Canola	nucleus	0.0	0.0
CDY37044	Canola	nucleus	0.0	0.0
CDY33407	Canola	nucleus	0.0	0.0
CDY29584	Canola	nucleus	0.0	0.0
CDY28823	Canola	nucleus	0.0	0.0
CDY21475	Canola	nucleus	0.0	0.0
CDY10989	Canola	nucleus	0.0	0.0
CDY03485	Canola	nucleus	0.0	0.0
CDX97531	Canola	nucleus	0.0	0.0
CDX92617	Canola	nucleus	0.0	0.0
CDX82503	Canola	nucleus	0.0	0.0
CDX75742	Canola	nucleus	0.0	0.0
CDX75672	Canola	nucleus	0.0	0.0
CDX71979	Canola	nucleus	0.0	0.0
CDX69322	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.420.140	MapMan:35.2	GO:A0A078CH74	EnsemblPlants:CDX76250	ProteinID:CDX76250	ProteinID:CDX76250.1
GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00126588001
InterPro:IPR037027	HAMAP:MF_00651	PFAM:PF03652	PANTHER:PTHR33317	PANTHER:PTHR33317:SF1	InterPro:RNaseH-like_sf
SMART:SM00732	SUPFAM:SSF53098	TIGRFAMs:TIGR00250	UniParc:UPI0004EEE923	InterPro:YqgF	InterPro:YqgF/RNaseH-like_dom
InterPro:YqgF/RNaseH-like_dom_sf	:	:	:	:	:

Description

BnaA04g05140D

Coordinates

chrLK031806:+:2146720..2148084

Molecular Weight (calculated)

19315.8 Da

IEP (calculated)

9.417

GRAVY (calculated)

-0.074

Length

170 amino acids

Sequence
(BLAST)

001: MKYVKPLRLL GDALKTKVSV PGRFLGLDVG DKYVGLAVSD PSNMIASPLS VLLRKKTNID LMATDFQNLV KSFSVSGLVV GYPFGKLNNV EDVVIVNLFI
101: EELRKTEKLK DVKYTYWDER LSSKTVELML KPLKLHPVQE KTMLDKFAAV VILQEYLDYA NRYVKTEPEE

Best Arabidopsis Sequence Match ( AT3G52905.1 )
(BLAST)

001: MKYVKPLSLL GNALKTKVSV PGRFLGLDVG DKYVGLAISD PSNMVASPLS VLLRKKSNID LMATDFQNLV KAFSVSGLVV GYPFGKLNNV EDVVTVNLFI
101: EELRKTEKLK DVKYTYWDER LSSKTVELML KPLNLHPVQE KTMLDKLAAV VILQEYLDYA NRYVNTEPAE

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYR7]
SUBAcon: [mitochondrion,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.