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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT2G06200.2 Thale cress endoplasmic reticulum, plasma membrane 67.08 57.6
CDY33407 Canola nucleus 84.36 51.25
GSMUA_Achr8P30640_001 Banana nucleus 32.1 24.38
GSMUA_Achr7P02330_001 Banana nucleus 33.74 23.84
GSMUA_Achr1P21940_001 Banana nucleus 34.57 22.16
CDX82503 Canola nucleus 29.63 19.67
CDY55116 Canola nucleus 22.63 19.5
CDX71979 Canola nucleus 30.86 19.48
CDX75742 Canola nucleus 29.22 19.45
CDY51791 Canola nucleus 25.51 18.96
CDY39081 Canola nucleus 30.86 18.84
CDX97531 Canola nucleus 30.04 18.81
CDY55209 Canola nucleus 30.04 18.72
CDY28823 Canola nucleus 25.51 17.87
CDY66422 Canola nucleus 22.63 17.57
CDX75039 Canola nucleus 26.75 16.88
CDX84126 Canola nucleus 27.16 16.84
CDX84560 Canola nucleus 24.69 16.3
CDX79674 Canola nucleus 24.28 16.03
CDX67545 Canola nucleus 23.05 15.38
CDY13333 Canola nucleus 23.05 15.3
CDY43721 Canola nucleus 22.22 15.21
CDX78132 Canola nucleus 22.63 14.59
CDX73595 Canola nucleus 22.63 14.44
CDX76249 Canola nucleus 23.87 14.18
CDX83200 Canola nucleus 22.22 13.71
CDY29584 Canola nucleus 22.63 13.48
CDY72447 Canola nucleus, plastid 18.93 13.37
CDX75672 Canola nucleus 24.28 13.08
CDY03485 Canola nucleus 18.52 12.93
CDX69322 Canola nucleus 23.87 12.58
CDY10989 Canola nucleus 19.34 12.5
CDX92617 Canola nucleus 20.58 12.29
CDX72654 Canola nucleus 22.22 12.22
CDY27382 Canola nucleus 21.81 11.94
CDY37044 Canola nucleus 21.4 11.9
CDY21475 Canola nucleus 21.81 10.66
CDY66284 Canola nucleus 23.46 10.59
CDX76250 Canola cytosol, golgi, mitochondrion, nucleus 0.0 0.0
Protein Annotations
MapMan:15.5.52.1GO:A0A078JXR2UniProt:A0A078JXR2EnsemblPlants:CDY70432ProteinID:CDY70432ProteinID:CDY70432.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0032502InterPro:GRF
EnsemblPlantsGene:GSBRNA2T00003401001InterPro:IPR014977PFAM:PF08879PFscan:PS51667PANTHER:PTHR31602UniParc:UPI0004EDE859
InterPro:WRC_domSEG:seg::::
Description
BnaCnng68330DBnaCnng68330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JXR2]
Coordinates
chrLK042087:-:1970..2925
Molecular Weight (calculated)
27775.7 Da
IEP (calculated)
8.361
GRAVY (calculated)
-0.837
Length
243 amino acids
Sequence
(BLAST)
001: MTTRIPFTES QWEELENQAL FHLISYSSSE DPFSSLLLLT PHLPTSFLHT LGGMCTRWAG MERKIDAEPG RCRRTDGKKW RCSKDASPDS KYCERHMHRG
101: KNRSSRKPLP PPPQFSVPST PSIFLDFSLA SSRAKSKRTG YMNDFFSIEP SGSIKSCSGL AMEEDGGSSK YESLKQREKQ PDRSCFILGT ELGTLERPLM
201: LEAKQKQRDD KDYEEEEQRS KIFYKFLDEW PSSKSSGSTS LFI
Best Arabidopsis Sequence Match ( AT2G06200.2 )
(BLAST)
001: MDTLSIKTYL LLSYTFNFPI QIPIFNLSFF FISLSLSLFM ATRIPFTESQ WEELENQALV FKYLAANMPV PPHLLFLIKR PFLFSSSSSS SSSSSFFSPT
101: LSPHFGWNVY EMGMGRKIDA EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSSSR KPPPTQFTPN LFLDSSSRRR RSGYMDDFFS IEPSGSIKSC
201: SGSAMEDNDD GSCRGINNEE KQPDRHCFIL GTDLRTRERP LMLEEKLKQR DHDNEEEQGS KRFYRFLDEW PSSKSSVSTS LFI
Arabidopsis Description
AtGRF6growth-regulating factor 6 [Source:TAIR;Acc:AT2G06200]
SUBAcon: [plasma membrane,endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.