Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AT2G06200.2 | Thale cress | endoplasmic reticulum, plasma membrane | 67.08 | 57.6 |
CDY33407 | Canola | nucleus | 84.36 | 51.25 |
GSMUA_Achr8P30640_001 | Banana | nucleus | 32.1 | 24.38 |
GSMUA_Achr7P02330_001 | Banana | nucleus | 33.74 | 23.84 |
GSMUA_Achr1P21940_001 | Banana | nucleus | 34.57 | 22.16 |
CDX82503 | Canola | nucleus | 29.63 | 19.67 |
CDY55116 | Canola | nucleus | 22.63 | 19.5 |
CDX71979 | Canola | nucleus | 30.86 | 19.48 |
CDX75742 | Canola | nucleus | 29.22 | 19.45 |
CDY51791 | Canola | nucleus | 25.51 | 18.96 |
CDY39081 | Canola | nucleus | 30.86 | 18.84 |
CDX97531 | Canola | nucleus | 30.04 | 18.81 |
CDY55209 | Canola | nucleus | 30.04 | 18.72 |
CDY28823 | Canola | nucleus | 25.51 | 17.87 |
CDY66422 | Canola | nucleus | 22.63 | 17.57 |
CDX75039 | Canola | nucleus | 26.75 | 16.88 |
CDX84126 | Canola | nucleus | 27.16 | 16.84 |
CDX84560 | Canola | nucleus | 24.69 | 16.3 |
CDX79674 | Canola | nucleus | 24.28 | 16.03 |
CDX67545 | Canola | nucleus | 23.05 | 15.38 |
CDY13333 | Canola | nucleus | 23.05 | 15.3 |
CDY43721 | Canola | nucleus | 22.22 | 15.21 |
CDX78132 | Canola | nucleus | 22.63 | 14.59 |
CDX73595 | Canola | nucleus | 22.63 | 14.44 |
CDX76249 | Canola | nucleus | 23.87 | 14.18 |
CDX83200 | Canola | nucleus | 22.22 | 13.71 |
CDY29584 | Canola | nucleus | 22.63 | 13.48 |
CDY72447 | Canola | nucleus, plastid | 18.93 | 13.37 |
CDX75672 | Canola | nucleus | 24.28 | 13.08 |
CDY03485 | Canola | nucleus | 18.52 | 12.93 |
CDX69322 | Canola | nucleus | 23.87 | 12.58 |
CDY10989 | Canola | nucleus | 19.34 | 12.5 |
CDX92617 | Canola | nucleus | 20.58 | 12.29 |
CDX72654 | Canola | nucleus | 22.22 | 12.22 |
CDY27382 | Canola | nucleus | 21.81 | 11.94 |
CDY37044 | Canola | nucleus | 21.4 | 11.9 |
CDY21475 | Canola | nucleus | 21.81 | 10.66 |
CDY66284 | Canola | nucleus | 23.46 | 10.59 |
CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
MapMan:15.5.52.1 | GO:A0A078JXR2 | UniProt:A0A078JXR2 | EnsemblPlants:CDY70432 | ProteinID:CDY70432 | ProteinID:CDY70432.1 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF |
EnsemblPlantsGene:GSBRNA2T00003401001 | InterPro:IPR014977 | PFAM:PF08879 | PFscan:PS51667 | PANTHER:PTHR31602 | UniParc:UPI0004EDE859 |
InterPro:WRC_dom | SEG:seg | : | : | : | : |
Description
BnaCnng68330DBnaCnng68330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JXR2]
Coordinates
chrLK042087:-:1970..2925
Molecular Weight (calculated)
27775.7 Da
IEP (calculated)
8.361
GRAVY (calculated)
-0.837
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRIPFTES QWEELENQAL FHLISYSSSE DPFSSLLLLT PHLPTSFLHT LGGMCTRWAG MERKIDAEPG RCRRTDGKKW RCSKDASPDS KYCERHMHRG
101: KNRSSRKPLP PPPQFSVPST PSIFLDFSLA SSRAKSKRTG YMNDFFSIEP SGSIKSCSGL AMEEDGGSSK YESLKQREKQ PDRSCFILGT ELGTLERPLM
201: LEAKQKQRDD KDYEEEEQRS KIFYKFLDEW PSSKSSGSTS LFI
101: KNRSSRKPLP PPPQFSVPST PSIFLDFSLA SSRAKSKRTG YMNDFFSIEP SGSIKSCSGL AMEEDGGSSK YESLKQREKQ PDRSCFILGT ELGTLERPLM
201: LEAKQKQRDD KDYEEEEQRS KIFYKFLDEW PSSKSSGSTS LFI
001: MDTLSIKTYL LLSYTFNFPI QIPIFNLSFF FISLSLSLFM ATRIPFTESQ WEELENQALV FKYLAANMPV PPHLLFLIKR PFLFSSSSSS SSSSSFFSPT
101: LSPHFGWNVY EMGMGRKIDA EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSSSR KPPPTQFTPN LFLDSSSRRR RSGYMDDFFS IEPSGSIKSC
201: SGSAMEDNDD GSCRGINNEE KQPDRHCFIL GTDLRTRERP LMLEEKLKQR DHDNEEEQGS KRFYRFLDEW PSSKSSVSTS LFI
101: LSPHFGWNVY EMGMGRKIDA EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSSSR KPPPTQFTPN LFLDSSSRRR RSGYMDDFFS IEPSGSIKSC
201: SGSAMEDNDD GSCRGINNEE KQPDRHCFIL GTDLRTRERP LMLEEKLKQR DHDNEEEQGS KRFYRFLDEW PSSKSSVSTS LFI
Arabidopsis Description
AtGRF6growth-regulating factor 6 [Source:TAIR;Acc:AT2G06200]
SUBAcon: [plasma membrane,endoplasmic reticulum]
SUBAcon: [plasma membrane,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.