CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013767.1-P	Field mustard	nucleus	99.13	91.91
CDY03485	Canola	nucleus	88.66	87.64
CDY10989	Canola	nucleus	70.06	64.1
CDX92617	Canola	nucleus	65.99	55.77
AT4G24150.1	Thale cress	nucleus	70.35	49.09
VIT_02s0025g02680.t01	Wine grape	nucleus	22.09	42.46
CDY55116	Canola	nucleus	21.8	26.6
Solyc08g083230.1.1	Tomato	nucleus	30.23	26.13
CDY66422	Canola	nucleus	22.67	24.92
PGSC0003DMT400031893	Potato	nucleus	29.36	23.93
CDX83200	Canola	nucleus	23.84	20.81
CDY51791	Canola	nucleus	19.48	20.49
CDX79674	Canola	nucleus	21.8	20.38
CDY29584	Canola	nucleus	24.13	20.34
CDX73595	Canola	nucleus	22.38	20.21
CDX84560	Canola	nucleus	21.51	20.11
CDX67545	Canola	nucleus	20.93	19.78
CDX75039	Canola	nucleus	22.09	19.74
CDY13333	Canola	nucleus	20.93	19.67
CDX84126	Canola	nucleus	22.38	19.64
CDX78132	Canola	nucleus	21.51	19.63
CDY28823	Canola	nucleus	19.77	19.6
CDY43721	Canola	nucleus	19.77	19.15
CDX72654	Canola	nucleus	24.42	19.0
CDY70432	Canola	nucleus	13.37	18.93
CDX75672	Canola	nucleus	24.71	18.85
CDX76249	Canola	nucleus	21.51	18.09
CDX69322	Canola	nucleus	23.84	17.79
CDX82503	Canola	nucleus	15.7	14.75
CDY33407	Canola	nucleus	17.15	14.75
CDY21475	Canola	nucleus	21.22	14.69
CDY39081	Canola	nucleus	16.86	14.57
CDX71979	Canola	nucleus	16.28	14.55
CDX97531	Canola	nucleus	16.28	14.43
CDY55209	Canola	nucleus	16.28	14.36
CDX75742	Canola	nucleus	15.12	14.25
CDY66284	Canola	nucleus	21.8	13.94
CDY37044	Canola	nucleus	16.28	12.81
CDY27382	Canola	nucleus	16.28	12.61
CDX76250	Canola	cytosol, golgi, mitochondrion, nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.52.1	GO:A0A078K3H4	UniProt:A0A078K3H4	EnsemblPlants:CDY72447	ProteinID:CDY72447	ProteinID:CDY72447.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF	EnsemblPlantsGene:GSBRNA2T00029783001
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF2	SMART:SM00951	UniParc:UPI0004EDFE29	InterPro:WRC_dom
SEG:seg	:	:	:	:	:

Description

BnaCnng77670DBnaCnng77670D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K3H4]

Coordinates

chrLK051093:-:602..2115

Molecular Weight (calculated)

38056.6 Da

IEP (calculated)

6.988

GRAVY (calculated)

-0.835

Length

344 amino acids

Sequence
(BLAST)

001: REVMIPSHHH HHYPSYISPS SYSGSAGVTD PVFSSSTNHA YTCSLGEMYS LAGSNSAAVS AADPLFTLSS SGEMGRSMSE KEGAAAAAFS ESQWQELERQ
101: RNIYEYIMAS LPVPPELLTP FPKHPSHTYH HDVAKGGSLK LGITSNASNN AADMEPWRCK RTDGKKWRCS RSAVPDQKYC ERHTHKSRPR SRKHVESSQH
201: NDTRTTKNAA SHYAGTYPQL YGQPVNPFSN DHREFRWFMK EDDSNANLNP AVGPSRELKL GFDYDLNFRQ EEALVNQSFG ALEGGGMEEA ERRRNQQDQW
301: VSHEGPSWIC YTSPGGPLAE ALFLGASNDP SASTTTSSCS RSSS

Best Arabidopsis Sequence Match ( AT4G24150.2 )
(BLAST)

001: MRMLLGIPYV DKSVLSNSVL ERGKQDKSKL LLVDKCHYEL DVEERKEDFV GGFGFGVVEN SHKDVMVLPH HHYYPSYSSP SSSSLCYCSA GVSDPMFSVS
101: SNQAYTSSHS GMFTPAGSGS AAVTVADPFF SLSSSGEMRR SMNEDAGAAF SEAQWHELER QRNIYKYMMA SVPVPPELLT PFPKNHQSNT NPDVTVAVAT
201: GGSLQLGIAS SASNNTADLE PWRCKRTDGK KWRCSRNVIP DQKYCERHTH KSRPRSRKHV ESSHQSSHHN DIRTAKNDTS QLVRTYPQFY GQPISQIPVL
301: STLPSASSPY DHHRGLRWFT KEDDAIGTLN PETQEAVQLK VGSSRELKRG FDYDLNFRQK EPIVDQSFGA LQGLLSLNQT PQHNQETRQF VVEGKQDEAM
401: GSSLTLSMAG GGMEETEGTN QHQWVSHEGP SWLYSTTPGG PLAEALCLGV SNNPSSSTTT SSCSRSSS

Arabidopsis Description

GRF8Growth-regulating factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.