Factsheet for Bra013767.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72447	Canola	nucleus, plastid	91.91	99.13
Bra019244.1-P	Field mustard	nucleus	64.15	63.47
AT4G24150.1	Thale cress	nucleus	69.54	52.33
VIT_02s0025g02680.t01	Wine grape	nucleus	20.49	42.46
Solyc08g083230.1.1	Tomato	nucleus	28.57	26.63
PGSC0003DMT400031893	Potato	nucleus	28.3	24.88
Bra022667.1-P	Field mustard	nucleus	19.14	20.46
Bra023066.1-P	Field mustard	nucleus	20.22	20.38
Bra006956.1-P	Field mustard	nucleus	20.75	20.16
Bra028541.1-P	Field mustard	nucleus	19.68	19.95
Bra005268.1-P	Field mustard	nucleus	20.75	19.85
Bra011781.1-P	Field mustard	nucleus	23.45	19.29
Bra017240.1-P	Field mustard	nucleus	18.6	19.06
Bra017851.1-P	Field mustard	nucleus	22.91	19.02
Bra000575.1-P	Field mustard	nucleus	25.07	17.95
Bra015184.1-P	Field mustard	nucleus	16.17	15.0
Bra001532.1-P	Field mustard	nucleus	14.56	14.88
Bra027384.1-P	Field mustard	nucleus	15.09	14.32
Bra019640.1-P	Field mustard	nucleus	19.95	13.75
Bra039334.1-P	Field mustard	nucleus	14.82	12.91
Bra021521.1-P	Field mustard	cytosol	12.4	11.19

Protein Annotations

MapMan:15.5.52.1	EnsemblPlantsGene:Bra013767	EnsemblPlants:Bra013767.1	EnsemblPlants:Bra013767.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M4DBA7	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF2	SMART:SM00951	UniParc:UPI00025460B3	InterPro:WRC_dom	SEG:seg	:

Description

AT4G24150 (E=2e-039) AtGRF8 | AtGRF8 (GROWTH-REGULATING FACTOR 8); transcription activator

Coordinates

chrA01:+:7684176..7685680

Molecular Weight (calculated)

40904.0 Da

IEP (calculated)

6.928

GRAVY (calculated)

-0.781

Length

371 amino acids

Sequence
(BLAST)

001: MMGTRAEHNK EDFVGCGFGF GVVEPSHREV MIPSHHHHHY PSYISPSSYS GSAGVTDPVF SSSTNHAYTC SLGEMYSLAG SNSAAVSAAD PLFTLSSSGE
101: MGRSMSEKEG AAAAAFSESQ WQELERQRNI YEYIMASLPV PPELLTPFPK HPSHTYHHDV AKGGSLKLGI TSNASNNAAD MEPWRCKRTD GKKWRCSRSA
201: VPDQKYCERH THKSRPRSRK HVESSQHNDT RTTKNAASHY AGTYPQLYGQ PVNPFSNDHR EFRWFMKEDD SNANLNPAVG PSRELKLGFD YDLNFRQEEA
301: LVNQSFGALE GGGMEGAERR RNQQDQWVSH EGPSWICYTS PGGPLAEALF LGASNDPSVS TTTSSCSRSS G

Best Arabidopsis Sequence Match ( AT4G24150.3 )
(BLAST)

001: MGTRAERKED FVGGFGFGVV ENSHKDVMVL PHHHYYPSYS SPSSSSLCYC SAGVSDPMFS VSSNQAYTSS HSGMFTPAGS GSAAVTVADP FFSLSSSGEM
101: RRSMNEDAGA AFSEAQWHEL ERQRNIYKYM MASVPVPPEL LTPFPKNHQS NTNPDVTVAV ATGGSLQLGI ASSASNNTAD LEPWRCKRTD GKKWRCSRNV
201: IPDQKYCERH THKSRPRSRK HVESSHQSSH HNDIRTAKND TSQLVRTYPQ FYGQPISQIP VLSTLPSASS PYDHHRGLRW FTKEDDAIGT LNPETQEAVQ
301: LKVGSSRELK RGFDYDLNFR QKEPIVDQSF GALQGLLSLN QTPQHNQETR QFVVEGKQDE AMGSSLTLSM AGGGMEETEG TNQHQWVSHE GPSWLYSTTP
401: GGPLAEALCL GVSNNPSSST TTSSCSRSSS

Arabidopsis Description

GRF8Growth-regulating factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.