Factsheet for Bra039334.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37044	Canola	nucleus	99.77	97.25
CDY27382	Canola	nucleus	95.77	91.89
AT2G45480.3	Thale cress	nucleus	73.0	72.16
Bra023066.1-P	Field mustard	nucleus	18.78	21.74
TraesCS2B01G256600.2	Wheat	nucleus	13.15	21.29
Bra001532.1-P	Field mustard	nucleus	18.08	21.21
TraesCS2D01G246600.1	Wheat	nucleus	13.15	21.21
Bra005268.1-P	Field mustard	nucleus	19.01	20.88
Bra028541.1-P	Field mustard	nucleus	17.84	20.77
Os07t0467500-01	Rice	nucleus	12.91	20.45
EER99361	Sorghum	nucleus	12.91	20.3
Zm00001d021362_P001	Maize	extracellular, nucleus	12.68	20.07
Zm00001d006348_P001	Maize	nucleus	12.68	19.78
Bra017240.1-P	Field mustard	nucleus	16.2	19.06
Bra027384.1-P	Field mustard	nucleus	17.37	18.93
Bra022667.1-P	Field mustard	nucleus	15.26	18.73
Bra006956.1-P	Field mustard	nucleus	16.67	18.59
HORVU2Hr1G054270.3	Barley	plastid	12.68	18.0
TraesCS2A01G238700.1	Wheat	nucleus	13.15	17.55
Bra021521.1-P	Field mustard	cytosol	16.43	17.03
Bra019244.1-P	Field mustard	nucleus	14.32	16.27
Bra017851.1-P	Field mustard	nucleus	16.67	15.88
Bra013767.1-P	Field mustard	nucleus	12.91	14.82
Bra015184.1-P	Field mustard	nucleus	13.62	14.5
Bra000575.1-P	Field mustard	nucleus	17.61	14.48
Bra011781.1-P	Field mustard	nucleus	15.26	14.41
Bra019640.1-P	Field mustard	nucleus	16.2	12.83

Protein Annotations

MapMan:15.5.52.1	EnsemblPlantsGene:Bra039334	EnsemblPlants:Bra039334.1	EnsemblPlants:Bra039334.1-P	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977
InterPro:IPR014978	UniProt:M4FE13	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF3	SMART:SM00951	UniParc:UPI000254426A	InterPro:WRC_dom	SEG:seg

Description

AT2G45480 (E=5e-147) AtGRF9 | AtGRF9 (GROWTH-REGULATING FACTOR 9); transcription activator

Coordinates

chrA04:+:18568271..18569966

Molecular Weight (calculated)

47789.1 Da

IEP (calculated)

9.537

GRAVY (calculated)

-0.788

Length

426 amino acids

Sequence
(BLAST)

001: MQSPKTEEED EWRRKKWPCM KAAQLQEFRM QALVYRYIEA GVRVPNHLVV PIWNSLALSS SSSSGYLIHH NYPSSSNAVL NDKVDPEPTR CRRTDGKKWR
101: CSNKVLLFQK YCERHMHRGR KRSRKLVESS SSYDVASSFA STKRDNTDGL NSSTESHSVS HGAMSVSSNA QVVTIASLPS ARVCDNIPRP SLVVTESTNK
201: SVRRRITDMS YDDFIKQRGA TTCVRGFPVQ GSERLPSVQK FFPEASDNTS EAARISSNRK NEIIARSREW KNMNVNCGGL FPGIHFSPDT VLQDRGGFGL
301: HRVETDSEPG RCRRTDGKKW RCSKDVLSGQ KYCDRHMHRG SIKKKHPVET THTHENTVKT AARSVTCQDG DGQKLPVSVL GREQLSRVSD EKNTTNSCST
401: DTTITDIALK GEEDNEEVLS LCSSGV

Best Arabidopsis Sequence Match ( AT2G45480.3 )
(BLAST)

001: MKMQSPKMEQ EEVEEERMRN KWPWMKAAQL MEFRMQALVY RYIEAGLRVP HHLVVPIWNS LALSSSSNYN YHSSSLLSNK GVTHIDTLET EPTRCRRTDG
101: KKWRCSNTVL LFEKYCERHM HRGRKRSRKL VESSSEVASS STKYDNTYGL DRYNESQSHL HGTISGSSNA QVVTIASLPS ARSCENVIRP SLVISEFTNK
201: SVSHGRKNME MSYDDFINEK EASMCVGVVP LQGDESKPSV QKFFPEVSDK CLEAAKFSSN RKNDIIARSR EWKNMNVNGG LFHGIHFSPD TVLQERGCFR
301: LQGVETDNEP GRCRRTDGKK WRCSKDVLSG QKYCDKHMHR GMKKKHPVDT TNSHENAGFS PLTVETAVRS VVPCKDGDDQ KHSVSVMGIT LPRVSDEKST
401: SSCSTDTTIT DTALRGEDDD EEYLSLFSPG V

Arabidopsis Description

GRF9Growth-regulating factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9M3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.