Factsheet for Bra023066.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84560	Canola	nucleus	98.91	98.91
Bra017240.1-P	Field mustard	nucleus	80.43	81.77
Bra005268.1-P	Field mustard	nucleus	86.14	81.7
AT2G36400.1	Thale cress	nucleus	88.04	81.41
Bra028541.1-P	Field mustard	nucleus	64.95	65.3
Bra006956.1-P	Field mustard	nucleus	66.85	64.4
KRH30830	Soybean	nucleus	47.28	51.94
KRG96154	Soybean	nucleus	53.8	51.03
KRH67865	Soybean	nucleus	52.99	50.78
KRH32671	Soybean	nucleus	45.92	50.3
VIT_08s0007g03760.t01	Wine grape	nucleus	52.17	46.38
Solyc09g009200.1.1	Tomato	nucleus	47.83	46.19
Solyc10g083510.1.1	Tomato	nucleus	46.47	43.96
PGSC0003DMT400072628	Potato	nucleus	45.92	43.22
Bra019640.1-P	Field mustard	nucleus	62.77	42.94
GSMUA_Achr3P22790_001	Banana	nucleus	44.02	41.33
GSMUA_Achr8P07650_001	Banana	extracellular	35.33	41.14
Bra022667.1-P	Field mustard	nucleus	26.09	27.67
Bra017851.1-P	Field mustard	nucleus	26.63	21.92
Bra011781.1-P	Field mustard	nucleus	26.63	21.73
Bra019244.1-P	Field mustard	nucleus	21.2	20.8
Bra013767.1-P	Field mustard	nucleus	20.38	20.22
Bra027384.1-P	Field mustard	nucleus	20.92	19.69
Bra001532.1-P	Field mustard	nucleus	19.29	19.56
Bra000575.1-P	Field mustard	nucleus	26.9	19.11
Bra039334.1-P	Field mustard	nucleus	21.74	18.78
Bra015184.1-P	Field mustard	nucleus	19.57	18.0
Bra021521.1-P	Field mustard	cytosol	17.66	15.82

Protein Annotations

MapMan:15.5.52.1	EnsemblPlantsGene:Bra023066	EnsemblPlants:Bra023066.1	EnsemblPlants:Bra023066.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M4E2R5	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF39	SMART:SM00951	UniParc:UPI000253FF14	InterPro:WRC_dom	SEG:seg	:

Description

AT3G52910 (E=9e-091) AtGRF4 | AtGRF4 (GROWTH-REGULATING FACTOR 4); transcription activator

Coordinates

chrA03:-:8479330..8481503

Molecular Weight (calculated)

40353.8 Da

IEP (calculated)

8.591

GRAVY (calculated)

-0.668

Length

368 amino acids

Sequence
(BLAST)

001: MDLQLKQWRS KQVQTESEPQ PSAAKIPRHA FDPIQSQTAT STVLPLFAPE PASSKLSSLC PDSSSRFSKM GSFFSSAQWQ ELELQALIYR YMLAGAAVPQ
101: ELLLPIKKSL LHLSPSYFLH HLPHYQPAWY LGRGAMDPEP GRCRRTDGKK WRCSRDVFVG HKYCERHMHR GRNRSRKPVE TPIVNATTTT SMASPATAAP
201: SSTPSSFAFG GGEEVGQGGS SSFFFSSQSC SEVKQESNNN KRPYESHYGF GSNGSDGGHI LRHFFDDWPR SEADNSSSPM SSATCLSISM PGNSSSDVSL
301: KLSTGNEEEA RSNNIGRDQQ NMSWWSGGGT NHNHHHMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH

Best Arabidopsis Sequence Match ( AT2G36400.1 )
(BLAST)

001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH

Arabidopsis Description

GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.