CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92707
KRG97010
KRH34114
KRH68767

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52910.1	KRG92707	AT5G28640.1	15960617
AT3G52910.1	KRG97010	AT5G28640.1	15960617
AT3G52910.1	KRH34114	AT5G28640.1	15960617
AT3G52910.1	KRH68767	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67865	Soybean	nucleus	91.24	92.19
KRH30830	Soybean	nucleus	55.41	64.18
KRH32671	Soybean	nucleus	54.9	63.39
VIT_08s0007g03760.t01	Wine grape	nucleus	62.63	58.7
CDX79674	Canola	nucleus	51.55	54.35
CDY43721	Canola	nucleus	49.48	54.08
CDX84560	Canola	nucleus	51.29	54.08
Bra023066.1-P	Field mustard	nucleus	51.03	53.8
Bra017240.1-P	Field mustard	nucleus	50.0	53.59
AT2G36400.1	Thale cress	nucleus	54.64	53.27
Solyc09g009200.1.1	Tomato	nucleus	51.8	52.76
Solyc10g083510.1.1	Tomato	nucleus	52.58	52.44
PGSC0003DMT400072628	Potato	nucleus	52.84	52.43
Bra005268.1-P	Field mustard	nucleus	52.06	52.06
CDX75039	Canola	nucleus	51.55	51.95
CDX84126	Canola	nucleus	51.8	51.28
CDX67545	Canola	nucleus	47.94	51.1
Bra028541.1-P	Field mustard	nucleus	48.2	51.09
CDY13333	Canola	nucleus	47.68	50.55
AT3G52910.1	Thale cress	nucleus	49.23	50.26
CDX78132	Canola	nucleus	47.94	49.34
CDX73595	Canola	nucleus	47.94	48.82
GSMUA_Achr3P22790_001	Banana	nucleus	48.97	48.47
Bra006956.1-P	Field mustard	nucleus	47.42	48.17
GSMUA_Achr8P07650_001	Banana	extracellular	37.89	46.52
CDX76249	Canola	nucleus	46.91	44.5
Bra019640.1-P	Field mustard	nucleus	46.65	33.64
CDY66284	Canola	nucleus	45.88	33.09
KRH27682	Soybean	nucleus	22.94	28.9
KRH23984	Soybean	nucleus	24.74	28.83
KRH29333	Soybean	nucleus	24.74	28.15
KRH77798	Soybean	nucleus	22.94	27.99
KRH47599	Soybean	nucleus	21.91	24.64
KRH19281	Soybean	nucleus	23.71	23.96
KRH06183	Soybean	nucleus	21.91	23.61
KRH02627	Soybean	nucleus	22.68	23.34
KRH12524	Soybean	nucleus	21.91	23.29
KRH37478	Soybean	nucleus	21.65	23.01
KRH76368	Soybean	nucleus	19.59	22.69
KRG88739	Soybean	nucleus	33.76	22.05
KRH05542	Soybean	nucleus	34.02	22.0
KRH39656	Soybean	nucleus, plastid	19.07	21.96
KRH05543	Soybean	nucleus	33.51	21.35
KRG88736	Soybean	nucleus	32.73	21.2
KRH53600	Soybean	nucleus	30.15	20.24
KRH64328	Soybean	nucleus	30.15	19.73
KRH76298	Soybean	nucleus	19.59	16.59
KRH65240	Soybean	nucleus	18.81	15.6

Protein Annotations

EntrezGene:100814842	MapMan:15.5.52.1	EMBL:ACUP02012146	EnsemblPlantsGene:GLYMA_19G192700	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	UniProt:I1NAK6	InterPro:IPR014977
InterPro:IPR014978	ProteinID:KRG96153.1	EnsemblPlants:KRG96154	ProteinID:KRG96154	ProteinID:KRG96154.1	PFAM:PF08879
PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF12	SMART:SM00951
UniParc:UPI000233E173	InterPro:WRC_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:45041552..45045468

Molecular Weight (calculated)

42111.1 Da

IEP (calculated)

7.138

GRAVY (calculated)

-0.636

Length

388 amino acids

Sequence
(BLAST)

001: MDFHLKEWRN QHESEEQQHS TKMPKLLPES HHQQPSATAL PLFVPEPNSS SKVSTLSDST LAAETETMTT TTTNRLFPRM GSYFSLSQWQ ELELQALIFR
101: YMLAGAAVPP ELLQPIKKSL LHSPHYFLHH PLQHYQPAAL LQSGYWGRGA MDPEPGRCRR TDGKKWRCSR DVVAGQKYCE RHMHRGRNRS RKPVELPTPT
201: SANNCDGGSL GLGASSSSIS SPPLASASLK SPFDLLRLNE RSSGTKNEDE DHVGGDGRSG GGGGHMLRHF FDDWPRSLQD SDNVENNAAG PSLSISMPGN
301: AAAASSDVSL KLSTGYGEDP GPRNENVGLV AEQLQLNWAG GWASSNQVAS MGGPLAEALR SSISTSSPTS VLHHLPRGSG SETSIIST

Best Arabidopsis Sequence Match ( AT3G52910.1 )
(BLAST)

001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH

Arabidopsis Description

GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.