Factsheet for AT3G52910.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78132	Canola	nucleus	83.68	84.35
CDX73595	Canola	nucleus	84.47	84.25
Bra006956.1-P	Field mustard	nucleus	83.95	83.51
CDX67545	Canola	nucleus	79.47	82.97
Bra028541.1-P	Field mustard	nucleus	79.74	82.79
CDY13333	Canola	nucleus	78.95	81.97
CDX76249	Canola	nucleus	77.11	71.64
AT2G36400.1	Thale cress	nucleus	72.63	69.35
CDY66284	Canola	nucleus	77.37	54.65
Bra019640.1-P	Field mustard	nucleus	77.11	54.46
KRH30830	Soybean	nucleus	46.32	52.54
KRH32671	Soybean	nucleus	45.26	51.19
KRH67865	Soybean	nucleus	51.05	50.52
KRG96154	Soybean	nucleus	50.26	49.23
VIT_08s0007g03760.t01	Wine grape	nucleus	49.74	45.65
Solyc09g009200.1.1	Tomato	nucleus	45.26	45.14
PGSC0003DMT400072628	Potato	nucleus	43.95	42.71
Solyc10g083510.1.1	Tomato	nucleus	43.68	42.67
GSMUA_Achr8P07650_001	Banana	extracellular	33.42	40.19
GSMUA_Achr3P22790_001	Banana	nucleus	41.05	39.8
AT5G53660.1	Thale cress	nucleus	25.79	26.85
AT2G06200.2	Thale cress	endoplasmic reticulum, plasma membrane	17.37	23.32
AT4G37740.1	Thale cress	nucleus	26.58	18.88
AT2G22840.1	Thale cress	nucleus	25.79	18.49
AT3G13960.1	Thale cress	nucleus	18.68	17.88
AT4G24150.1	Thale cress	nucleus	21.84	16.84
AT2G45480.3	Thale cress	nucleus	18.68	16.47

Protein Annotations

MapMan:15.5.52.1	EntrezGene:824457	ProteinID:AEE79009.1	ArrayExpress:AT3G52910	EnsemblPlantsGene:AT3G52910	RefSeq:AT3G52910
TAIR:AT3G52910	RefSeq:AT3G52910-TAIR-G	EnsemblPlants:AT3G52910.1	TAIR:AT3G52910.1	EMBL:AY102637	Unigene:At.35248
Symbol:AtGRF4	ProteinID:CAB86895.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006364	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	GO:GO:0048366	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ
InterPro:IPR014977	InterPro:IPR014978	RefSeq:NP_190859.2	PFAM:PF08879	PFAM:PF08880	PO:PO:0000293
PO:PO:0009005	PO:PO:0009046	PO:PO:0020144	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF39	UniProt:Q8L8A7	SMART:SM00951	UniParc:UPI000009E016	InterPro:WRC_dom	SEG:seg

Description

GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]

Coordinates

chr3:-:19615977..19618507

Molecular Weight (calculated)

42535.9 Da

IEP (calculated)

7.375

GRAVY (calculated)

-0.838

Length

380 amino acids

Sequence
(BLAST)

001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.