Factsheet for GSMUA_Achr3P22790_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr8P20680_001
GSMUA_Achr9P10760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52910.1	GSMUA_Achr10P...	AT5G28640.1	15960617
AT3G52910.1	GSMUA_Achr8P20680_001	AT5G28640.1	15960617
AT3G52910.1	GSMUA_Achr9P10760_001	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P07650_001	Banana	extracellular	54.34	67.41
KRG96154	Soybean	nucleus	48.47	48.97
KRH67865	Soybean	nucleus	47.7	48.7
KRH30830	Soybean	nucleus	41.07	48.06
KRH32671	Soybean	nucleus	39.54	46.13
VIT_08s0007g03760.t01	Wine grape	nucleus	47.19	44.69
CDX79674	Canola	nucleus	41.58	44.29
Solyc10g083510.1.1	Tomato	nucleus	43.88	44.22
Bra023066.1-P	Field mustard	nucleus	41.33	44.02
CDX84560	Canola	nucleus	41.07	43.75
PGSC0003DMT400072628	Potato	nucleus	43.62	43.73
CDY43721	Canola	nucleus	39.54	43.66
CDX67545	Canola	nucleus	40.31	43.41
AT2G36400.1	Thale cress	nucleus	43.88	43.22
Bra028541.1-P	Field mustard	nucleus	40.31	43.17
CDY13333	Canola	nucleus	40.31	43.17
Bra017240.1-P	Field mustard	nucleus	39.8	43.09
Bra005268.1-P	Field mustard	nucleus	42.35	42.78
GSMUA_Achr5P20170_001	Banana	extracellular	18.62	42.69
CDX75039	Canola	nucleus	41.84	42.6
Solyc09g009200.1.1	Tomato	nucleus	41.33	42.52
CDX84126	Canola	nucleus	42.35	42.35
CDX78132	Canola	nucleus	39.8	41.38
AT3G52910.1	Thale cress	nucleus	39.8	41.05
CDX73595	Canola	nucleus	39.8	40.94
Bra006956.1-P	Field mustard	nucleus	39.03	40.05
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	19.13	36.59
CDX76249	Canola	nucleus	37.76	36.19
GSMUA_Achr8P12060_001	Banana	extracellular	17.86	34.65
GSMUA_Achr4P32310_001	Banana	nucleus	12.76	34.48
GSMUA_Achr10P...	Banana	nucleus	24.23	28.19
CDY66284	Canola	nucleus	37.76	27.51
Bra019640.1-P	Field mustard	nucleus	37.5	27.32
GSMUA_Achr1P23840_001	Banana	nucleus	24.49	26.74
GSMUA_Achr8P30640_001	Banana	nucleus	21.68	26.56
GSMUA_Achr7P02330_001	Banana	nucleus	23.21	26.45
GSMUA_Achr1P21940_001	Banana	nucleus	24.49	25.33
GSMUA_Achr6P01270_001	Banana	nucleus	21.43	25.0
GSMUA_AchrUn_...	Banana	nucleus	25.26	24.09
GSMUA_Achr2P04650_001	Banana	extracellular	25.0	22.74
GSMUA_Achr1P27000_001	Banana	nucleus	23.98	22.17
GSMUA_AchrUn_...	Banana	nucleus	18.88	21.7
GSMUA_Achr3P15140_001	Banana	nucleus	26.79	21.52
GSMUA_Achr8P04970_001	Banana	nucleus	28.57	19.28
GSMUA_Achr7P27480_001	Banana	nucleus	29.59	19.11
GSMUA_Achr8P26530_001	Banana	nucleus	29.08	7.95

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
EnsemblPlantsGene:GSMUA_Achr3G22790_001	EnsemblPlants:GSMUA_Achr3P22790_001	EnsemblPlants:GSMUA_Achr3T22790_001	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M0SGZ5	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF12	SMART:SM00951	UniParc:UPI000294CF0E	InterPro:WRC_dom	SEG:seg	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G22790_001]

Coordinates

chr3:-:23618681..23621191

Molecular Weight (calculated)

43864.6 Da

IEP (calculated)

7.453

GRAVY (calculated)

-0.638

Length

392 amino acids

Sequence
(BLAST)

001: MDSHRWSERQ QTDRQPCAGL PKLHLLDQQQ PPASALSLFA PEPCSGFHKT TTTIATPSLS SFPSYFTLAQ WQELELQALI YKYMIAGVSV PLELILPIKR
101: SLLSASPYYH HPELYQHLQP SLMQGVSWGR CSVDPEPGRC RRTDGKKWRC SREVVVGQKY CERHVHRGRN RSRKHVEIPT PTSLNGLKTG VSSPPPECAQ
201: HNHFDLSGSR DILPLSQRTM KICRWLQCDS PFYFELLHLM LLYFDSHCSL TLLHIELQDS KPEGYVLQRF FDEWPRSQQE SDDGLNYTSH PPSTTHLSMS
301: LPGNPSSDFS LKLSTGNNGE KQRPEEGSSN GGEDGRVVRP SNNWSGWGHH GEEASMGGPL AEALRSAAST QSPTSVLHKP NGSVSETSSI SP

Best Arabidopsis Sequence Match ( AT3G52910.1 )
(BLAST)

001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH

Arabidopsis Description

GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.