Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52910.1 | CDX86202 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY00027 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY05600 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY33883 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY57020 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67545 | Canola | nucleus | 96.17 | 96.7 |
| Bra028541.1-P | Field mustard | nucleus | 96.17 | 96.17 |
| CDX78132 | Canola | nucleus | 85.79 | 83.29 |
| CDX73595 | Canola | nucleus | 85.79 | 82.41 |
| AT3G52910.1 | Thale cress | nucleus | 81.97 | 78.95 |
| CDX76249 | Canola | nucleus | 78.69 | 70.42 |
| CDX84560 | Canola | nucleus | 65.03 | 64.67 |
| CDX79674 | Canola | nucleus | 64.75 | 64.4 |
| CDY43721 | Canola | nucleus | 62.3 | 64.23 |
| CDX75039 | Canola | nucleus | 67.49 | 64.16 |
| CDX84126 | Canola | nucleus | 67.21 | 62.76 |
| CDY66284 | Canola | nucleus | 78.69 | 53.53 |
| KRH30830 | Soybean | nucleus | 46.17 | 50.45 |
| KRH32671 | Soybean | nucleus | 45.08 | 49.11 |
| KRG96154 | Soybean | nucleus | 50.55 | 47.68 |
| KRH67865 | Soybean | nucleus | 50.0 | 47.66 |
| Solyc09g009200.1.1 | Tomato | nucleus | 46.45 | 44.62 |
| VIT_08s0007g03760.t01 | Wine grape | nucleus | 49.73 | 43.96 |
| PGSC0003DMT400072628 | Potato | nucleus | 45.36 | 42.46 |
| Solyc10g083510.1.1 | Tomato | nucleus | 45.08 | 42.42 |
| GSMUA_Achr3P22790_001 | Banana | nucleus | 43.17 | 40.31 |
| GSMUA_Achr8P07650_001 | Banana | extracellular | 33.33 | 38.61 |
| CDY55116 | Canola | nucleus | 22.95 | 29.79 |
| CDY51791 | Canola | nucleus | 24.86 | 27.83 |
| CDY66422 | Canola | nucleus | 23.5 | 27.48 |
| CDY28823 | Canola | nucleus | 24.86 | 26.22 |
| CDY70432 | Canola | nucleus | 15.3 | 23.05 |
| CDY29584 | Canola | nucleus | 25.68 | 23.04 |
| CDX72654 | Canola | nucleus | 26.23 | 21.72 |
| CDX83200 | Canola | nucleus | 23.22 | 21.57 |
| CDY72447 | Canola | nucleus, plastid | 19.67 | 20.93 |
| CDX75672 | Canola | nucleus | 25.68 | 20.84 |
| CDY03485 | Canola | nucleus | 19.67 | 20.69 |
| CDX69322 | Canola | nucleus | 25.96 | 20.61 |
| CDY10989 | Canola | nucleus | 20.77 | 20.21 |
| CDX92617 | Canola | nucleus | 21.58 | 19.41 |
| CDX82503 | Canola | nucleus | 19.4 | 19.4 |
| CDY55209 | Canola | nucleus | 20.49 | 19.23 |
| CDX97531 | Canola | nucleus | 20.22 | 19.07 |
| CDX75742 | Canola | nucleus | 18.58 | 18.63 |
| CDX71979 | Canola | nucleus | 19.4 | 18.44 |
| CDY39081 | Canola | nucleus | 19.95 | 18.34 |
| CDY37044 | Canola | nucleus | 21.31 | 17.85 |
| CDY33407 | Canola | nucleus | 19.13 | 17.5 |
| CDY27382 | Canola | nucleus | 21.04 | 17.34 |
| CDY21475 | Canola | nucleus | 22.68 | 16.7 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.27 | 0.59 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078FLZ6 | UniProt:A0A078FLZ6 | EnsemblPlants:CDY13333 | ProteinID:CDY13333 | ProteinID:CDY13333.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00071333001 |
| InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 |
| PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF39 | SMART:SM00951 | UniParc:UPI0004EE9AD2 | InterPro:WRC_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g14240DBnaC06g14240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLZ6]
Coordinates
chrLK032034:+:410404..412631
Molecular Weight (calculated)
40683.3 Da
IEP (calculated)
8.199
GRAVY (calculated)
-0.743
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLQLKLWRS QQQNESEEQS SAAKISNFFL DQIRSQTASS AAALPLFVPE PTLSPSVSCF SPNTSSSRFL KMGNLFSLAQ WQELELQALI YRYMLAGASV
101: PQELLLPIQK SLFQSPLNFL HHPQQQNFPH HQPWHWGRGA MDPEPGRCKR TDGKKWRCSR DVVGGHKYCD RHIHRGRNRS RKPVETAKPA TATAASSFVL
201: GEDLGHGPNN LFFSSDSSHS STKHLHLTSH QSCSSGMKQE SNKKRPYEAH SGLINGRSDD GNTLRPFFDD WPRSSDSTSS PMSSSNCHLS ISMPGNTSSD
301: VSLKLSTGDE VEEANNNERE QQQNMNWWSS GGNHHNMGGP LAEALRSASS TSSVLHQMGI SAQVFH
101: PQELLLPIQK SLFQSPLNFL HHPQQQNFPH HQPWHWGRGA MDPEPGRCKR TDGKKWRCSR DVVGGHKYCD RHIHRGRNRS RKPVETAKPA TATAASSFVL
201: GEDLGHGPNN LFFSSDSSHS STKHLHLTSH QSCSSGMKQE SNKKRPYEAH SGLINGRSDD GNTLRPFFDD WPRSSDSTSS PMSSSNCHLS ISMPGNTSSD
301: VSLKLSTGDE VEEANNNERE QQQNMNWWSS GGNHHNMGGP LAEALRSASS TSSVLHQMGI SAQVFH
001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
Arabidopsis Description
GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.