Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52910.1 | CDX86202 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY00027 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY05600 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY33883 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY57020 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78132 | Canola | nucleus | 96.33 | 97.35 |
| CDX67545 | Canola | nucleus | 82.94 | 86.81 |
| CDY13333 | Canola | nucleus | 82.41 | 85.79 |
| AT3G52910.1 | Thale cress | nucleus | 84.25 | 84.47 |
| CDX76249 | Canola | nucleus | 79.79 | 74.33 |
| CDX79674 | Canola | nucleus | 65.62 | 67.93 |
| CDX84560 | Canola | nucleus | 65.62 | 67.93 |
| CDY43721 | Canola | nucleus | 62.2 | 66.76 |
| CDX75039 | Canola | nucleus | 66.4 | 65.71 |
| CDX84126 | Canola | nucleus | 66.67 | 64.8 |
| CDY66284 | Canola | nucleus | 80.58 | 57.06 |
| KRH32671 | Soybean | nucleus | 43.83 | 49.7 |
| KRH30830 | Soybean | nucleus | 43.57 | 49.55 |
| KRH67865 | Soybean | nucleus | 49.08 | 48.7 |
| KRG96154 | Soybean | nucleus | 48.82 | 47.94 |
| VIT_08s0007g03760.t01 | Wine grape | nucleus | 50.92 | 46.86 |
| Solyc09g009200.1.1 | Tomato | nucleus | 45.41 | 45.41 |
| Solyc10g083510.1.1 | Tomato | nucleus | 43.83 | 42.93 |
| PGSC0003DMT400072628 | Potato | nucleus | 43.31 | 42.2 |
| GSMUA_Achr3P22790_001 | Banana | nucleus | 40.94 | 39.8 |
| GSMUA_Achr8P07650_001 | Banana | extracellular | 32.02 | 38.61 |
| CDY55116 | Canola | nucleus | 22.57 | 30.5 |
| CDY51791 | Canola | nucleus | 24.15 | 28.13 |
| CDY66422 | Canola | nucleus | 22.83 | 27.8 |
| CDY28823 | Canola | nucleus | 24.15 | 26.51 |
| CDX83200 | Canola | nucleus | 24.15 | 23.35 |
| CDY29584 | Canola | nucleus | 24.93 | 23.28 |
| CDY70432 | Canola | nucleus | 14.44 | 22.63 |
| CDY72447 | Canola | nucleus, plastid | 20.21 | 22.38 |
| CDY03485 | Canola | nucleus | 20.21 | 22.13 |
| CDX72654 | Canola | nucleus | 25.46 | 21.95 |
| CDY10989 | Canola | nucleus | 21.26 | 21.54 |
| CDX75672 | Canola | nucleus | 25.46 | 21.51 |
| CDX69322 | Canola | nucleus | 25.2 | 20.82 |
| CDX92617 | Canola | nucleus | 21.78 | 20.39 |
| CDY55209 | Canola | nucleus | 20.47 | 20.0 |
| CDX82503 | Canola | nucleus | 19.16 | 19.95 |
| CDX97531 | Canola | nucleus | 20.21 | 19.85 |
| CDX75742 | Canola | nucleus | 18.64 | 19.45 |
| CDY39081 | Canola | nucleus | 19.95 | 19.1 |
| CDX71979 | Canola | nucleus | 19.16 | 18.96 |
| CDY21475 | Canola | nucleus | 23.62 | 18.11 |
| CDY37044 | Canola | nucleus | 19.68 | 17.16 |
| CDY27382 | Canola | nucleus | 19.16 | 16.44 |
| CDY33407 | Canola | nucleus | 17.06 | 16.25 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.26 | 0.59 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078CA01 | EnsemblPlants:CDX73595 | ProteinID:CDX73595 | ProteinID:CDX73595.1 | ncoils:Coil |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00109151001 |
| InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 |
| PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF39 | SMART:SM00951 | UniParc:UPI0004EE383F | InterPro:WRC_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g24080D
Coordinates
chrLK031799:+:1499840..1502103
Molecular Weight (calculated)
42540.9 Da
IEP (calculated)
7.355
GRAVY (calculated)
-0.855
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLQLKQWRS QQQNESEEQG SATKMSNFFF DQIQSQTETS AAALPLFVPE PTSSSSFSCF TPDSSSSSTR HLKLGNFFSL AQWQELELQA LIYRYMLAGA
101: SVPQELLLPI KKSLFHQSPL NFLQHPLQHN FPHHQASWYW GRGAMDPEPG RCKRTDGKKW RCSRDVVGGH KYCDRHIHRG RNRSRKPVET TAKTATTNAA
201: TNAASSFVLG EELGHGPNNL FFSSGSSHHS SQHLHVNSHQ SCPSDMKQES NNNKRPYETH SGFSNGRSDD GHILRPFFDD WPRSSDSTSS PLTSSTCHLS
301: ISMPGNPPSD VSLKLSTGNE EEEANMRDSN NNEREQQQSM NWWSSGGNHN NMGGPLAEAL RSASSTSSVL QQMGISTQVF H
101: SVPQELLLPI KKSLFHQSPL NFLQHPLQHN FPHHQASWYW GRGAMDPEPG RCKRTDGKKW RCSRDVVGGH KYCDRHIHRG RNRSRKPVET TAKTATTNAA
201: TNAASSFVLG EELGHGPNNL FFSSGSSHHS SQHLHVNSHQ SCPSDMKQES NNNKRPYETH SGFSNGRSDD GHILRPFFDD WPRSSDSTSS PLTSSTCHLS
301: ISMPGNPPSD VSLKLSTGNE EEEANMRDSN NNEREQQQSM NWWSSGGNHN NMGGPLAEAL RSASSTSSVL QQMGISTQVF H
001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
Arabidopsis Description
GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.