Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22840.1 | CDX86202 | AT5G28640.1 | 15326298 |
| AT2G22840.1 | CDY00027 | AT5G28640.1 | 15326298 |
| AT2G22840.1 | CDY05600 | AT5G28640.1 | 15326298 |
| AT2G22840.1 | CDY33883 | AT5G28640.1 | 15326298 |
| AT2G22840.1 | CDY57020 | AT5G28640.1 | 15326298 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000575.1-P | Field mustard | nucleus | 99.49 | 75.68 |
| CDY55116 | Canola | nucleus | 50.25 | 70.21 |
| AT2G22840.1 | Thale cress | nucleus | 89.85 | 66.79 |
| CDY66422 | Canola | nucleus | 50.25 | 63.26 |
| GSMUA_Achr4P32310_001 | Banana | nucleus | 18.53 | 50.34 |
| CDX72654 | Canola | nucleus | 55.08 | 49.09 |
| CDY21475 | Canola | nucleus | 61.42 | 48.69 |
| CDY29584 | Canola | nucleus | 50.25 | 48.53 |
| CDX75672 | Canola | nucleus | 55.33 | 48.34 |
| CDX69322 | Canola | nucleus | 56.09 | 47.94 |
| Zm00001d007465_P001 | Maize | nucleus | 29.95 | 37.82 |
| VIT_00s0494g00010.t01 | Wine grape | nucleus | 55.84 | 36.85 |
| GSMUA_Achr1P27000_001 | Banana | nucleus | 39.34 | 36.56 |
| Os03t0729500-01 | Rice | nucleus | 42.13 | 36.4 |
| Os12t0484900-01 | Rice | nucleus, plastid | 35.79 | 34.14 |
| Solyc02g092070.2.1 | Tomato | nucleus | 48.22 | 33.45 |
| GSMUA_Achr3P15140_001 | Banana | nucleus | 41.37 | 33.4 |
| PGSC0003DMT400055151 | Potato | nucleus | 50.76 | 33.39 |
| KRH05542 | Soybean | nucleus | 50.25 | 33.0 |
| KRG88739 | Soybean | nucleus | 49.75 | 33.0 |
| KRH05543 | Soybean | nucleus | 50.25 | 32.51 |
| KRG88736 | Soybean | nucleus | 48.48 | 31.89 |
| KXG28671 | Sorghum | nucleus | 29.95 | 31.81 |
| Zm00001d006338_P002 | Maize | mitochondrion | 22.34 | 31.65 |
| HORVU4Hr1G037480.5 | Barley | nucleus | 25.13 | 30.18 |
| GSMUA_Achr8P04970_001 | Banana | nucleus | 42.64 | 28.92 |
| GSMUA_Achr7P27480_001 | Banana | nucleus | 43.15 | 28.01 |
| Zm00001d033876_P004 | Maize | nucleus | 41.88 | 27.82 |
| EER90936 | Sorghum | nucleus | 41.88 | 27.45 |
| TraesCS4D01G059600.1 | Wheat | nucleus | 39.59 | 26.99 |
| Zm00001d013346_P001 | Maize | nucleus | 39.85 | 26.84 |
| CDY28823 | Canola | nucleus | 23.35 | 26.51 |
| TraesCS4A01G255000.1 | Wheat | nucleus | 40.36 | 26.19 |
| HORVU4Hr1G010080.2 | Barley | nucleus | 40.36 | 26.11 |
| CDY51791 | Canola | nucleus | 21.57 | 25.99 |
| TraesCS4B01G060000.1 | Wheat | nucleus | 39.85 | 25.7 |
| GSMUA_AchrUn_... | Banana | nucleus | 22.08 | 25.51 |
| CDX73595 | Canola | nucleus | 23.35 | 24.15 |
| HORVU4Hr1G003440.12 | Barley | nucleus | 24.87 | 24.02 |
| CDX84560 | Canola | nucleus | 22.34 | 23.91 |
| CDX67545 | Canola | nucleus | 22.08 | 23.9 |
| CDX75039 | Canola | nucleus | 23.35 | 23.9 |
| CDY72447 | Canola | nucleus, plastid | 20.81 | 23.84 |
| CDX84126 | Canola | nucleus | 23.6 | 23.72 |
| CDX79674 | Canola | nucleus | 22.08 | 23.64 |
| CDX78132 | Canola | nucleus | 22.59 | 23.61 |
| Zm00001d033396_P003 | Maize | nucleus | 26.14 | 23.52 |
| TraesCS4A01G291500.1 | Wheat | nucleus | 24.11 | 23.28 |
| CDY03485 | Canola | nucleus | 20.56 | 23.28 |
| Os03t0674700-01 | Rice | nucleus | 25.13 | 23.24 |
| CDY13333 | Canola | nucleus | 21.57 | 23.22 |
| TraesCS4D01G020300.1 | Wheat | nucleus | 24.11 | 22.89 |
| EER93679 | Sorghum | nucleus | 24.62 | 22.3 |
| CDY70432 | Canola | nucleus | 13.71 | 22.22 |
| CDY10989 | Canola | nucleus | 21.07 | 22.07 |
| CDX82503 | Canola | nucleus | 20.3 | 21.86 |
| Zm00001d013555_P001 | Maize | nucleus | 24.11 | 21.79 |
| CDY43721 | Canola | nucleus | 19.54 | 21.69 |
| CDX76249 | Canola | nucleus | 22.08 | 21.27 |
| CDX75742 | Canola | nucleus | 19.54 | 21.1 |
| CDX92617 | Canola | nucleus | 21.57 | 20.88 |
| CDX97531 | Canola | nucleus | 20.56 | 20.88 |
| CDY55209 | Canola | nucleus | 20.56 | 20.77 |
| CDY39081 | Canola | nucleus | 20.81 | 20.6 |
| Zm00001d002049_P001 | Maize | cytosol, plastid | 5.08 | 20.41 |
| CDX71979 | Canola | nucleus | 19.54 | 20.0 |
| CDY37044 | Canola | nucleus | 18.78 | 16.93 |
| CDY27382 | Canola | nucleus | 18.53 | 16.44 |
| CDY66284 | Canola | nucleus | 22.08 | 16.17 |
| CDY33407 | Canola | nucleus | 16.24 | 16.0 |
| GSMUA_Achr8P26530_001 | Banana | nucleus | 46.19 | 12.69 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.51 | 1.18 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078D242 | EnsemblPlants:CDX83200 | ProteinID:CDX83200 | ProteinID:CDX83200.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00138740001 | InterPro:Gln-Leu-Gln_QLQ |
| InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 | PFscan:PS51667 |
| PANTHER:PTHR31602 | PANTHER:PTHR31602:SF22 | SMART:SM00951 | UniParc:UPI0004EDCBBE | InterPro:WRC_dom | SEG:seg |
Description
BnaA03g23060D
Coordinates
chrLK031832:+:376940..378854
Molecular Weight (calculated)
42150.2 Da
IEP (calculated)
9.828
GRAVY (calculated)
-0.543
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MHGSLLTGAK GPFSLTQWAE LEQQALIYKY ITANVPVPSS LLLSLKKSFF PYGSLPPNSF GWGSFHLGFS GGNMDPEPGR CRRTDGKKWR CSRDAVPDQK
101: YCERHINRGR HRSRKPVEGL NGHNTNATAA ASAASKAAAA TTVVATRGSD NNNSLAAVGT HHHHAIPSMA NRVQNAQGAS VFPATMNLQL KESHQKQSSS
201: PFEFGLISSD SLLNPSHKQP SYANSSKGFG SYLDFSNQAK NSNVDSWTEE LKSDWTQLSM SIPMAPSSPV QDKLALSPLR LSREFDPAIH MGLGVNTEFL
301: EPVKKANNWI PISWGNNNNS MGGPLGEVLN STTNSPKFGS SPTGVLQKST FGSLSNSSSG SSTVLGDNSN KNCDGKDPLG PTTLMNSSAP APSM
101: YCERHINRGR HRSRKPVEGL NGHNTNATAA ASAASKAAAA TTVVATRGSD NNNSLAAVGT HHHHAIPSMA NRVQNAQGAS VFPATMNLQL KESHQKQSSS
201: PFEFGLISSD SLLNPSHKQP SYANSSKGFG SYLDFSNQAK NSNVDSWTEE LKSDWTQLSM SIPMAPSSPV QDKLALSPLR LSREFDPAIH MGLGVNTEFL
301: EPVKKANNWI PISWGNNNNS MGGPLGEVLN STTNSPKFGS SPTGVLQKST FGSLSNSSSG SSTVLGDNSN KNCDGKDPLG PTTLMNSSAP APSM
001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL
Arabidopsis Description
GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.