Factsheet for TraesCS4B01G060000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G250600.1
TraesCS4B01G064000.1
TraesCS4D01G062900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	TraesCS4A01G250600.1	AT5G28640.1	15326298
AT2G22840.1	TraesCS4B01G064000.1	AT5G28640.1	15326298
AT2G22840.1	TraesCS4D01G062900.1	AT5G28640.1	15326298
AT4G37740.1	TraesCS4A01G250600.1	AT5G28640.1	15326298
AT4G37740.1	TraesCS4B01G064000.1	AT5G28640.1	15326298
AT4G37740.1	TraesCS4D01G062900.1	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G059600.1	Wheat	nucleus	92.31	97.58
TraesCS4A01G255000.1	Wheat	nucleus	95.91	96.54
HORVU4Hr1G010080.2	Barley	nucleus	92.96	93.27
Os03t0729500-01	Rice	nucleus	59.57	79.82
EER90936	Sorghum	nucleus	73.0	74.21
Zm00001d033876_P004	Maize	nucleus	70.54	72.68
Zm00001d013346_P001	Maize	nucleus	63.34	66.15
GSMUA_Achr3P15140_001	Banana	nucleus	38.3	47.95
GSMUA_Achr1P27000_001	Banana	nucleus	31.75	45.75
GSMUA_Achr7P27480_001	Banana	nucleus	45.34	45.63
GSMUA_Achr8P04970_001	Banana	nucleus	43.21	45.44
CDY55116	Canola	nucleus	19.8	42.91
VIT_18s0001g08650.t01	Wine grape	nucleus	41.9	42.38
CDX83200	Canola	nucleus	25.7	39.85
CDY66422	Canola	nucleus	20.29	39.62
KRG88739	Soybean	nucleus	38.3	39.39
KRH05542	Soybean	nucleus	37.97	38.67
KRH05543	Soybean	nucleus	38.3	38.42
KRG88736	Soybean	nucleus	37.64	38.4
TraesCS6B01G267500.1	Wheat	nucleus	13.09	37.91
GSMUA_AchrUn_...	Banana	nucleus	21.11	37.83
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	35.68	36.52
Solyc04g077510.2.1	Tomato	nucleus	35.02	35.97
Bra000575.1-P	Field mustard	nucleus	30.44	35.91
AT2G22840.1	Thale cress	nucleus	30.93	35.66
CDX69322	Canola	nucleus	26.84	35.57
CDX72654	Canola	nucleus	25.7	35.52
CDX75672	Canola	nucleus	26.19	35.48
Bra011781.1-P	Field mustard	nucleus	26.02	35.26
Bra017851.1-P	Field mustard	nucleus	25.37	34.68
CDY29584	Canola	nucleus	23.08	34.56
TraesCS2B01G416300.1	Wheat	nucleus	12.44	33.48
AT4G37740.1	Thale cress	nucleus	29.3	33.46
TraesCS7B01G070200.1	Wheat	nucleus	14.4	27.85
TraesCS2B01G458400.1	Wheat	nucleus, plastid	16.53	26.1
CDY21475	Canola	nucleus	21.11	25.96
TraesCS6B01G296900.1	Wheat	plastid	17.18	25.86
TraesCS6B01G204300.1	Wheat	plastid	9.49	23.97
TraesCS6B01G366700.1	Wheat	nucleus	15.38	22.93
TraesCS2B01G256600.2	Wheat	nucleus	9.33	21.67
GSMUA_Achr8P26530_001	Banana	nucleus	44.52	18.97

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF40	SMART:SM00951	EnsemblPlantsGene:TraesCS4B01G060000	EnsemblPlants:TraesCS4B01G060000.1
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:51679823..51683700

Molecular Weight (calculated)

64281.1 Da

IEP (calculated)

7.204

GRAVY (calculated)

-0.423

Length

611 amino acids

Sequence
(BLAST)

001: MDLGGVLMAA ADAGVGGGDL GMLGSRLLKH GRGNAAAAEA DEHGWGSGRP PAKQARVAAS AASGDSDAVS EAVKAAAPYL LGTCSPGHGR EKMLSFSSSQ
101: PPSCPSSAAA AAAQAALPLY YGTPASCSGL SSVSLSASIQ NAMARVRGPF TPSQWMELEH QALIYKYLAA NIAVPHNLLV PIRRSVTSLY PSAYFGSSTL
201: GWGPFQLGYS GSADLEPGRC RRTDGKKWRC SRDAVADQKY CERHMNRGRH RSRKHVEGQP GHAAKAMPAT VAAAAAQPGA LATGGGGGAT AGAAAICHEQ
301: QPLKNYAANT IDPCSLQYNR EMVSKQQQHE CEQVQDSDTL SMLTSMSARN TNTGSMFPFS KEHHNHNPFE VTSSRPDYGL VSSDSLMSSP HSSLENVNLL
401: TSHSQRALSN EQQSSLSLQH FADWPRTPSQ QGQGGGGLSW PDAEDMQAHQ RTQLSVSAAP MASPDLSSAS TSPIHEKLML SPLKLSREYS PIGLSIAATA
501: AAAKDEGEAN WMPMFRDSSM GGPLGEALNK NNGGNMEAKN YLSASLNLMT DAWDSSPLES SPVGVLQRTA FGSVSSSTGS SPRQEYHGVY DGNPRDDLGS
601: IVVNHPSIRL M

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.