Factsheet for TraesCS6B01G296900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G269600.1	Wheat	nucleus	94.09	93.63
TraesCS6D01G245300.1	Wheat	plastid	93.6	92.91
HORVU6Hr1G068370.1	Barley	nucleus	77.34	80.51
HORVU0Hr1G016610.1	Barley	plastid	70.69	68.82
HORVU0Hr1G016590.2	Barley	cytosol, nucleus	33.74	64.62
EES12787	Sorghum	nucleus	58.13	62.43
Zm00001d002429_P003	Maize	nucleus	54.68	61.84
Zm00001d026240_P006	Maize	plastid	57.88	59.19
TraesCS2B01G458400.1	Wheat	nucleus, plastid	55.91	58.66
TraesCS6B01G267500.1	Wheat	nucleus	17.24	33.18
TraesCS7B01G070200.1	Wheat	nucleus	25.37	32.59
TraesCS2B01G416300.1	Wheat	nucleus	16.75	29.96
TraesCS6B01G366700.1	Wheat	nucleus	28.08	27.8
TraesCS2B01G256600.2	Wheat	nucleus	15.52	23.95
TraesCS6B01G204300.1	Wheat	plastid	11.58	19.42
TraesCS4B01G060000.1	Wheat	nucleus	25.86	17.18

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF21	SMART:SM00951	EnsemblPlantsGene:TraesCS6B01G296900	EnsemblPlants:TraesCS6B01G296900.1
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:532900263..532903528

Molecular Weight (calculated)

43437.6 Da

IEP (calculated)

8.348

GRAVY (calculated)

-0.571

Length

406 amino acids

Sequence
(BLAST)

001: MAMPYASLSP AGDRRSSPAA TASLLPFCRS SPFSAGNGGM GEEARMAGRW MARPAPFTAA QYEELEHQAL IYKYLVAGVP VPPDLVLPIR RGIETLAARF
101: YHNPLAIGYG SYLGKKVDPE PGRCRRTDGK KWRCAKEAAS DSKYCERHMH RGRNRSRKPV ETQLVSHSQP PAASVVPPLA TGFHNHSLYP AIGGTNGGGG
201: GGNNGMPNTF SSALGPPQQH MGNNASSPYA ALGGAGTCKD FRYTAYGIRS LADEHSQLMT EAMNTSVENP WRLPPSSQTT TFPLSSYAPQ LGATSDLGQN
301: NNSSSSNSAV KSERQQQQQP LSFPGCGDFG GGGAMDSAKQ ENQTLRPFFD EWPKTRDSWS DLTDDNSSLA SFSATQLSIS IPMTSSDFSA ASSQSPNGML
401: FAGEMY

Best Arabidopsis Sequence Match ( AT2G36400.1 )
(BLAST)

001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH

Arabidopsis Description

GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.