Factsheet for TraesCS2B01G416300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G395900.1	Wheat	nucleus	98.68	97.82
TraesCS2A01G398300.2	Wheat	nucleus	96.48	97.33
HORVU2Hr1G094460.2	Barley	mitochondrion, plasma membrane	82.38	83.48
HORVU2Hr1G094470.2	Barley	nucleus	90.31	81.03
Os04t0574500-01	Rice	cytosol, mitochondrion, nucleus, plastid	73.57	70.76
Zm00001d051456_P001	Maize	nucleus	68.72	70.59
TraesCS6B01G267500.1	Wheat	nucleus	62.11	66.82
GSMUA_Achr5P20170_001	Banana	extracellular	44.93	59.65
GSMUA_Achr8P12060_001	Banana	extracellular	47.14	52.97
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	43.61	48.29
VIT_02s0025g04910.t01	Wine grape	nucleus	33.48	36.36
PGSC0003DMT400009997	Potato	nucleus	15.42	28.69
TraesCS2B01G256600.2	Wheat	nucleus	29.52	25.48
Solyc08g079800.2.1	Tomato	nucleus	24.23	25.23
TraesCS7B01G070200.1	Wheat	nucleus	27.31	19.62
TraesCS2B01G458400.1	Wheat	nucleus, plastid	29.96	17.57
TraesCS6B01G296900.1	Wheat	plastid	29.96	16.75
TraesCS6B01G366700.1	Wheat	nucleus	26.87	14.88
TraesCS6B01G204300.1	Wheat	plastid	15.42	14.46
TraesCS4B01G060000.1	Wheat	nucleus	33.48	12.44

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF3	SMART:SM00951	EnsemblPlantsGene:TraesCS2B01G416300	EnsemblPlants:TraesCS2B01G416300.1
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:594982670..594983536

Molecular Weight (calculated)

24078.5 Da

IEP (calculated)

10.201

GRAVY (calculated)

-0.479

Length

227 amino acids

Sequence
(BLAST)

001: MTERRQEHSP PSKLPRLSGP DADDNDGAGT VTMAAPSPLV LGLGLGVGGS SSDSGRGDAE ASAATRPSAL TFMQRQELEH QVLIYRYFAA NAPVPVHLVL
101: PIWKSVAASS SAPQRFPSLA GLGSMCYDHR SSMEPEPDRC RRTDGKKWRC SRGVMPGHKY CERHVHRGRG RARKPVEAAP ATSAIPIRAM HAADAQGATS
201: AHAAPPQRLG FSSPAGVYLA HGTARAT

Best Arabidopsis Sequence Match ( AT2G36400.1 )
(BLAST)

001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH

Arabidopsis Description

GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.