Factsheet for GSMUA_Achr8P12060_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
cytosol 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20170_001	Banana	extracellular	64.85	76.61
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	74.75	73.66
Zm00001d051456_P001	Maize	nucleus	58.42	53.39
TraesCS6A01G257600.1	Wheat	nucleus	54.95	52.36
Os02t0678800-01	Rice	nucleus	53.96	51.66
TraesCS6B01G267500.1	Wheat	nucleus	53.96	51.66
TraesCS6D01G238900.1	Wheat	nucleus	53.47	50.23
Os04t0574500-01	Rice	cytosol, mitochondrion, nucleus, plastid	57.43	49.15
TraesCS2A01G398300.2	Wheat	nucleus	53.96	48.44
HORVU6Hr1G065740.4	Barley	nucleus	50.49	47.89
HORVU2Hr1G094460.2	Barley	mitochondrion, plasma membrane	52.97	47.77
TraesCS2D01G395900.1	Wheat	nucleus	53.96	47.6
TraesCS2B01G416300.1	Wheat	nucleus	52.97	47.14
HORVU2Hr1G094470.2	Barley	nucleus	52.48	41.9
VIT_02s0025g04910.t01	Wine grape	nucleus	41.09	39.71
GSMUA_Achr4P32310_001	Banana	nucleus	24.75	34.48
PGSC0003DMT400009997	Potato	nucleus	17.82	29.51
Solyc08g079800.2.1	Tomato	nucleus	28.22	26.15
GSMUA_Achr10P...	Banana	nucleus	36.14	21.66
GSMUA_Achr1P23840_001	Banana	nucleus	37.13	20.89
GSMUA_Achr8P30640_001	Banana	nucleus	32.18	20.31
GSMUA_Achr6P01270_001	Banana	nucleus	32.18	19.35
GSMUA_Achr7P02330_001	Banana	nucleus	31.68	18.6
GSMUA_AchrUn_...	Banana	nucleus	31.19	18.48
GSMUA_Achr8P07650_001	Banana	extracellular	28.71	18.35
GSMUA_AchrUn_...	Banana	nucleus	36.63	18.0
GSMUA_Achr3P22790_001	Banana	nucleus	34.65	17.86
GSMUA_Achr2P04650_001	Banana	extracellular	37.62	17.63
GSMUA_Achr1P21940_001	Banana	nucleus	31.19	16.62
GSMUA_Achr1P27000_001	Banana	nucleus	31.19	14.86
GSMUA_Achr3P15140_001	Banana	nucleus	32.67	13.52
GSMUA_Achr8P04970_001	Banana	nucleus	34.16	11.88
GSMUA_Achr7P27480_001	Banana	nucleus	34.16	11.37
GSMUA_Achr8P26530_001	Banana	nucleus	33.66	4.74

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
EnsemblPlantsGene:GSMUA_Achr8G12060_001	EnsemblPlants:GSMUA_Achr8P12060_001	EnsemblPlants:GSMUA_Achr8T12060_001	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M0TPQ9	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
SMART:SM00951	UniParc:UPI0002960043	InterPro:WRC_dom	SEG:seg	:	:

Description

growth regulating factor protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G12060_001]

Coordinates

chr8:+:8790216..8790938

Molecular Weight (calculated)

21772.5 Da

IEP (calculated)

10.400

GRAVY (calculated)

-0.230

Length

202 amino acids

Sequence
(BLAST)

001: MEGIVTMAAP SPLMLGLGLG LGRGVGASKP VFTFMQLQEL EHQALIYKYM AAGLPVPVHL VLPIWKSVAA SSFGHYSYPS LMGYGSLCLD YRNIMEPEPG
101: RCRRTDGKKW RCSRDVVPNQ KYCERHMHRG RNRPRKPVEA GATTPITATS TQLSITVPAV GRQLTTDANT GISGGSRVSP PGQGLSHARV LRNDAAGKTV
201: AS

Best Arabidopsis Sequence Match ( AT2G36400.1 )
(BLAST)

001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH

Arabidopsis Description

GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.