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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G267500.1 Wheat nucleus 75.83 75.83
Zm00001d051456_P001 Maize nucleus 79.15 75.57
TraesCS6A01G257600.1 Wheat nucleus 74.88 74.53
TraesCS6D01G238900.1 Wheat nucleus 75.83 74.42
HORVU6Hr1G065740.4 Barley nucleus 69.19 68.54
Os04t0574500-01 Rice cytosol, mitochondrion, nucleus, plastid 72.04 64.41
GSMUA_Achr5P20170_001 Banana extracellular 51.66 63.74
GSMUA_Achr8P12060_001 Banana extracellular 51.66 53.96
GSMUA_Achr11P... Banana mitochondrion, plasma membrane 50.24 51.71
VIT_02s0025g04910.t01 Wine grape nucleus 34.6 34.93
PGSC0003DMT400009997 Potato nucleus 16.59 28.69
Solyc08g079800.2.1 Tomato nucleus 26.07 25.23
Os07t0467500-01 Rice nucleus 31.75 24.91
Os06t0204800-00 Rice nucleus 28.91 20.27
Os04t0600900-02 Rice plastid 34.6 19.01
Os02t0701300-01 Rice nucleus, plastid 34.6 18.53
Os11t0551900-01 Rice nucleus 12.8 17.31
Os12t0484900-01 Rice nucleus, plastid 31.28 15.98
Os03t0674700-01 Rice nucleus 30.33 15.02
Os02t0776900-01 Rice mitochondrion, nucleus 27.96 14.86
Os03t0729500-01 Rice nucleus 31.28 14.47
Protein Annotations
MapMan:15.5.52.1EntrezGene:4330314EMBL:AK108170ProteinID:BAD29245.1ProteinID:BAD29371.1ProteinID:BAF09649.1
ProteinID:BAS80287.1ProteinID:DAA04954.1GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0032502
InterPro:GRFInterPro:Gln-Leu-Gln_QLQInterPro:IPR014977InterPro:IPR014978EnsemblPlantsGene:Os02g0678800EnsemblPlants:Os02t0678800-01
PFAM:PF08879PFAM:PF08880PFscan:PS51666PFscan:PS51667PANTHER:PTHR31602PANTHER:PTHR31602:SF3
UniProt:Q6EPP9SMART:SM00951UniParc:UPI00003CE91FInterPro:WRC_domRefSeq:XP_015624931.1SEG:seg
Description
GROWTH-REGULATING FACTOR 10Transcriptional activator/repressor, Reguration of KNOX gene, Oskn2 (regulator of meristem function), Floral organogenesis (Os02t0678800-01)
Coordinates
chr2:+:27727857..27728960
Molecular Weight (calculated)
22311.6 Da
IEP (calculated)
9.582
GRAVY (calculated)
-0.362
Length
211 amino acids
Sequence
(BLAST)
001: MDEEKEADSP QPPSKLPRLS GADPNAGVVT MAAPPPPVGL GLGLGLGGDS RGERDVEASA AAAHKATALT FMQQQELEHQ VLIYRYFAAG APVPVHLVLP
101: IWKSVASSSF GPHRFPSLAV MGLGNLCFDY RSSMEPDPGR CRRTDGKKWR CSRDVVPGHK YCERHVHRGR GRSRKPVEAS AAATPANNGG GGGIVFSPTS
201: VLLAHGTARA T
Best Arabidopsis Sequence Match ( AT2G36400.1 )
(BLAST)
001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH
Arabidopsis Description
GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.