Factsheet for Os12t0484900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0733600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	Os03t0733600-01	AT5G28640.1	15326298
AT4G37740.1	Os03t0733600-01	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55116	Canola	nucleus	29.06	42.55
Os03t0729500-01	Rice	nucleus	43.83	39.69
CDY66422	Canola	nucleus	29.78	39.3
GSMUA_Achr3P15140_001	Banana	nucleus	44.55	37.7
GSMUA_Achr1P27000_001	Banana	nucleus	37.77	36.79
Os11t0551900-01	Rice	nucleus	13.56	35.9
CDX83200	Canola	nucleus	34.14	35.79
GSMUA_Achr8P04970_001	Banana	nucleus	47.22	33.56
GSMUA_Achr7P27480_001	Banana	nucleus	49.15	33.44
GSMUA_AchrUn_...	Banana	nucleus	26.63	32.26
Os02t0678800-01	Rice	nucleus	15.98	31.28
CDX72654	Canola	nucleus	33.41	31.22
CDY29584	Canola	nucleus	30.75	31.13
Bra017851.1-P	Field mustard	nucleus	33.41	30.87
VIT_18s0001g08650.t01	Wine grape	nucleus	44.79	30.63
Solyc04g077510.2.1	Tomato	nucleus	43.58	30.25
CDX75672	Canola	nucleus	32.45	29.71
Bra011781.1-P	Field mustard	nucleus	32.45	29.71
Os04t0574500-01	Rice	cytosol, mitochondrion, nucleus, plastid	16.95	29.66
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	42.86	29.65
KRG88739	Soybean	nucleus	42.62	29.63
KRH05542	Soybean	nucleus	42.37	29.17
CDX69322	Canola	nucleus	32.2	28.85
KRH05543	Soybean	nucleus	42.37	28.74
KRG88736	Soybean	nucleus	41.16	28.38
Os06t0204800-00	Rice	nucleus	20.58	28.24
Bra000575.1-P	Field mustard	nucleus	35.35	28.19
AT2G22840.1	Thale cress	nucleus	35.84	27.92
AT4G37740.1	Thale cress	nucleus	33.17	25.61
Os04t0600900-02	Rice	plastid	22.03	23.7
Os03t0674700-01	Rice	nucleus	23.24	22.54
CDY21475	Canola	nucleus	27.12	22.54
Os02t0701300-01	Rice	nucleus, plastid	20.58	21.57
Os07t0467500-01	Rice	nucleus	13.08	20.07
Os02t0776900-01	Rice	mitochondrion, nucleus	19.13	19.9
GSMUA_Achr8P26530_001	Banana	nucleus	50.12	14.44

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A0P0YA26	ProteinID:BAT17167.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EnsemblPlantsGene:Os12g0484900
EnsemblPlants:Os12t0484900-01	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF40	SMART:SM00951	UniParc:UPI000393A2D8	InterPro:WRC_dom	SEG:seg	:

Description

GROWTH-REGULATING FACTOR 7Similar to Growth-regulating factor 7. (Os12t0484900-01)

Coordinates

chr12:+:17915628..17919491

Molecular Weight (calculated)

44173.9 Da

IEP (calculated)

9.447

GRAVY (calculated)

-0.499

Length

413 amino acids

Sequence
(BLAST)

001: RRMAMATPTT NGSFLLGSGL DCGSSDVARM QGVLARVRGP FTPTQWMELE HQALIYKHIV ANAPVPAGLL LPIRRSLHPP VFPHFSSGGI LGSSSLGWGS
101: FQLGYSGSAD SEPGRCRRTD GKKWRCSRDA VVDQKYCERH INRGRHRSRK HVEGQSSHAA KATVPAIAQP PIGASNGKLS GSHGVSNELT KTLATNRMML
201: DKANLIERSQ DYTNQQHNIL QNNTKGDNWS EEMSSQADYA VIPAGSLMNT PQSANLNPIP QQQRCKQSLF GKGIQHDDIQ LSISIPVDNS DLPTNYNKAQ
301: MDHVVGGSSN GGNNTRASWI PGSWEASIGG PLGEFFTNTS SASDDKGKSR HPPSLNLLAD GHTTSPQLQS PTGVLQMTSF SSVPSSTVSS PAGSLCNGLL
401: TSGLVNAQTV QTL

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.