Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G37740.1 | CDX86202 | AT5G28640.1 | 15326298 |
| AT4G37740.1 | CDY00027 | AT5G28640.1 | 15326298 |
| AT4G37740.1 | CDY05600 | AT5G28640.1 | 15326298 |
| AT4G37740.1 | CDY33883 | AT5G28640.1 | 15326298 |
| AT4G37740.1 | CDY57020 | AT5G28640.1 | 15326298 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011781.1-P | Field mustard | nucleus | 93.71 | 95.79 |
| CDX75672 | Canola | nucleus | 93.71 | 95.79 |
| CDX72654 | Canola | nucleus | 71.37 | 74.43 |
| CDY55116 | Canola | nucleus | 45.12 | 73.76 |
| CDY29584 | Canola | nucleus | 65.08 | 73.53 |
| CDY66422 | Canola | nucleus | 47.94 | 70.61 |
| AT4G37740.1 | Thale cress | nucleus | 80.69 | 69.53 |
| CDX83200 | Canola | nucleus | 47.94 | 56.09 |
| GSMUA_Achr4P32310_001 | Banana | nucleus | 13.67 | 43.45 |
| CDY21475 | Canola | nucleus | 46.64 | 43.26 |
| VIT_00s0494g00010.t01 | Wine grape | nucleus | 47.29 | 36.52 |
| KRG88739 | Soybean | nucleus | 44.9 | 34.85 |
| KRH05542 | Soybean | nucleus | 45.34 | 34.83 |
| Zm00001d007465_P001 | Maize | nucleus | 23.43 | 34.62 |
| KRG88736 | Soybean | nucleus | 44.69 | 34.39 |
| KRH05543 | Soybean | nucleus | 45.34 | 34.32 |
| GSMUA_Achr3P15140_001 | Banana | nucleus | 35.79 | 33.81 |
| Solyc02g092070.2.1 | Tomato | nucleus | 41.65 | 33.8 |
| PGSC0003DMT400055151 | Potato | nucleus | 43.82 | 33.72 |
| HORVU4Hr1G037480.5 | Barley | nucleus | 23.43 | 32.93 |
| GSMUA_Achr1P27000_001 | Banana | nucleus | 30.15 | 32.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 24.08 | 32.55 |
| Os12t0484900-01 | Rice | nucleus, plastid | 28.85 | 32.2 |
| Os03t0729500-01 | Rice | nucleus | 31.45 | 31.8 |
| KXG28671 | Sorghum | nucleus | 25.16 | 31.27 |
| GSMUA_Achr8P04970_001 | Banana | nucleus | 37.96 | 30.12 |
| CDY28823 | Canola | nucleus | 22.13 | 29.39 |
| CDY51791 | Canola | nucleus | 20.82 | 29.36 |
| GSMUA_Achr7P27480_001 | Banana | nucleus | 37.96 | 28.83 |
| EER90936 | Sorghum | nucleus | 37.31 | 28.62 |
| HORVU4Hr1G003440.12 | Barley | nucleus | 25.16 | 28.43 |
| Zm00001d033876_P004 | Maize | nucleus | 36.23 | 28.16 |
| Zm00001d033396_P003 | Maize | nucleus | 26.46 | 27.85 |
| TraesCS4D01G059600.1 | Wheat | nucleus | 34.49 | 27.51 |
| TraesCS4A01G291500.1 | Wheat | nucleus | 24.08 | 27.21 |
| Zm00001d013346_P001 | Maize | nucleus | 34.49 | 27.18 |
| CDX79674 | Canola | nucleus | 21.69 | 27.17 |
| CDX84560 | Canola | nucleus | 21.69 | 27.17 |
| HORVU4Hr1G010080.2 | Barley | nucleus | 35.79 | 27.09 |
| Zm00001d006338_P002 | Maize | mitochondrion | 16.27 | 26.98 |
| TraesCS4A01G255000.1 | Wheat | nucleus | 35.36 | 26.85 |
| TraesCS4B01G060000.1 | Wheat | nucleus | 35.57 | 26.84 |
| CDX75039 | Canola | nucleus | 22.34 | 26.75 |
| EER93679 | Sorghum | nucleus | 25.16 | 26.67 |
| CDX84126 | Canola | nucleus | 22.56 | 26.53 |
| TraesCS4D01G020300.1 | Wheat | nucleus | 23.86 | 26.51 |
| CDY13333 | Canola | nucleus | 20.61 | 25.96 |
| CDX67545 | Canola | nucleus | 20.39 | 25.82 |
| Os03t0674700-01 | Rice | nucleus | 23.86 | 25.82 |
| Zm00001d013555_P001 | Maize | nucleus | 23.86 | 25.23 |
| CDX78132 | Canola | nucleus | 20.61 | 25.2 |
| CDX73595 | Canola | nucleus | 20.82 | 25.2 |
| CDY43721 | Canola | nucleus | 18.87 | 24.51 |
| CDY70432 | Canola | nucleus | 12.58 | 23.87 |
| CDY72447 | Canola | nucleus, plastid | 17.79 | 23.84 |
| CDY03485 | Canola | nucleus | 17.57 | 23.28 |
| CDY10989 | Canola | nucleus | 18.22 | 22.34 |
| CDX76249 | Canola | nucleus | 19.31 | 21.76 |
| CDX92617 | Canola | nucleus | 19.09 | 21.62 |
| CDY33407 | Canola | nucleus | 16.92 | 19.5 |
| CDX97531 | Canola | nucleus | 16.27 | 19.33 |
| CDY55209 | Canola | nucleus | 16.27 | 19.23 |
| CDX71979 | Canola | nucleus | 16.05 | 19.22 |
| CDX82503 | Canola | nucleus | 15.18 | 19.13 |
| CDY39081 | Canola | nucleus | 16.27 | 18.84 |
| CDX75742 | Canola | nucleus | 14.75 | 18.63 |
| Zm00001d002049_P001 | Maize | cytosol, plastid | 3.9 | 18.37 |
| CDY66284 | Canola | nucleus | 19.09 | 16.36 |
| CDY37044 | Canola | nucleus | 14.53 | 15.33 |
| CDY27382 | Canola | nucleus | 14.75 | 15.32 |
| GSMUA_Achr8P26530_001 | Banana | nucleus | 39.26 | 12.62 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078BYB6 | EnsemblPlants:CDX69322 | ProteinID:CDX69322 | ProteinID:CDX69322.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00131157001 | InterPro:Gln-Leu-Gln_QLQ |
| InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 | PFscan:PS51667 |
| PANTHER:PTHR31602 | PANTHER:PTHR31602:SF22 | SMART:SM00951 | UniParc:UPI0004EF4747 | InterPro:WRC_dom | SEG:seg |
Description
BnaC01g01310D
Coordinates
chrLK031789:-:4135056..4136954
Molecular Weight (calculated)
50552.8 Da
IEP (calculated)
9.470
GRAVY (calculated)
-0.690
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLGSVTGNV NGSPGLKELR GSKQDRSGFD GEDCLQQSSK LARTIAEDKH LPSSYAAYSR PMSFHQGIPL TRSASLLSSD SRRQEHMLSF SDKPEAFDFS
101: KYVGLDNNKN SLSPFLHQLP PPYCRSSGGG YGSGGMMMSM QGKGPFTLTQ WAELEQQALI YKYITANVPV PSSLLISIQK SFYPYRSFPP SSFGWGTFHL
201: GFAGGKMDPE PGRCRRTDGK KWRCSKDAVP EQKYCERHIN RGRHRSRKPV EVQPGQTAAS KAVASRNTAS QIPSNRVQNV IYPSNVNLQP KEQRNNDNSP
301: FGFGHVTSSS LLTSSYLDFS SNQEKPSGNH HNQSSWPEEL KSDWTQLSMS IPVASSSPSS TAQDKTALSP LRLDLPIQSQ QETLESARKV NTWIPISWGN
401: SLGGPLGEVL NSTTSSPTLG SSPTGVLQKS TFCSLSNSSS VTSPIADNNR NNNVDYFHYT T
101: KYVGLDNNKN SLSPFLHQLP PPYCRSSGGG YGSGGMMMSM QGKGPFTLTQ WAELEQQALI YKYITANVPV PSSLLISIQK SFYPYRSFPP SSFGWGTFHL
201: GFAGGKMDPE PGRCRRTDGK KWRCSKDAVP EQKYCERHIN RGRHRSRKPV EVQPGQTAAS KAVASRNTAS QIPSNRVQNV IYPSNVNLQP KEQRNNDNSP
301: FGFGHVTSSS LLTSSYLDFS SNQEKPSGNH HNQSSWPEEL KSDWTQLSMS IPVASSSPSS TAQDKTALSP LRLDLPIQSQ QETLESARKV NTWIPISWGN
401: SLGGPLGEVL NSTTSSPTLG SSPTGVLQKS TFCSLSNSSS VTSPIADNNR NNNVDYFHYT T
001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT
Arabidopsis Description
GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.