CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90925

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	EER90925	AT5G28640.1	15326298
AT4G37740.1	EER90925	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013555_P001	Maize	nucleus	88.74	88.53
Zm00001d033396_P003	Maize	nucleus	86.44	85.84
Os03t0674700-01	Rice	nucleus	68.74	70.19
HORVU4Hr1G003440.12	Barley	nucleus	62.53	66.67
TraesCS4A01G291500.1	Wheat	nucleus	62.53	66.67
TraesCS4D01G020300.1	Wheat	nucleus	63.22	66.27
CDY55116	Canola	nucleus	21.38	32.98
CDY66422	Canola	nucleus	22.53	31.31
CDY29584	Canola	nucleus	25.06	26.72
Bra011781.1-P	Field mustard	nucleus	26.67	25.72
CDX75672	Canola	nucleus	26.67	25.72
CDX72654	Canola	nucleus	25.98	25.57
Bra017851.1-P	Field mustard	nucleus	25.98	25.28
CDX69322	Canola	nucleus	26.67	25.16
CDX83200	Canola	nucleus	22.3	24.62
KXG28671	Sorghum	nucleus	20.69	24.26
OQU76020	Sorghum	mitochondrion, nucleus	17.93	23.08
VIT_18s0001g08650.t01	Wine grape	nucleus	30.57	22.02
KRH05542	Soybean	nucleus	30.34	22.0
EES12787	Sorghum	nucleus	19.08	21.96
KRH05543	Soybean	nucleus	30.57	21.84
Bra000575.1-P	Field mustard	nucleus	25.98	21.81
KRG88739	Soybean	nucleus	29.66	21.72
AT4G37740.1	Thale cress	nucleus	26.67	21.68
AT2G22840.1	Thale cress	nucleus	26.21	21.51
KRG88736	Soybean	nucleus	29.43	21.37
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	28.74	20.94
Solyc04g077510.2.1	Tomato	nucleus	28.51	20.84
EER90936	Sorghum	nucleus	28.28	20.47
KXG31209	Sorghum	mitochondrion, nucleus	18.16	19.95
EER99361	Sorghum	nucleus	12.41	19.93
EER89089	Sorghum	cytosol, mitochondrion, nucleus	14.25	19.44
CDY21475	Canola	nucleus	21.38	18.71
OQU85555	Sorghum	plastid	18.39	18.31

Protein Annotations

MapMan:15.5.52.1	EntrezGene:8054183	UniProt:C5WPQ0	EnsemblPlants:EER93679	ProteinID:EER93679	ProteinID:EER93679.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ
InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF18	SMART:SM00951	EnsemblPlantsGene:SORBI_3001G139800	UniParc:UPI0001A82A19	InterPro:WRC_dom
RefSeq:XP_002466681.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:11114461..11117281

Molecular Weight (calculated)

47575.0 Da

IEP (calculated)

9.292

GRAVY (calculated)

-0.689

Length

435 amino acids

Sequence
(BLAST)

001: MSAEFCAAAG GGGAAVAMEF GVVGDVMGLQ QGIAVTAPSP RDSSDLGLLK RAALTQAAAA AAAPYPSPFL DEQKMLRFSK AAHTLPSGLD FGGPSEQAFL
101: LSRTKRPFTP SQWMELEHQA LIYKYLNAKA PIPSSLLISI SKSFRSSNRV SWRPLYQGYT NADSDPEPGR CRRTDGKKWR CSKEAMADHK YCERHINRNR
201: HRSRKPVENQ PKKTTKEVPA AAGSLPCAGP QGSLKKAKVN DSKPGTVSYW TDNLNRTMLN REKANKLTED NSLLLNSTNS QPTLSLLSQL KQQNKPDKLG
301: PTLENESNSD TILKAWGGNQ PSHKGISSAQ RHDADSLQSV LQNFSLAQNE KMESEKNKYS DSMLVSSTFY SADGPRSTCL TPNMTQVQQD CISSSWEMPQ
401: GGPLGEILSN NKNSEDLSKC ESRSYGWLLN LDQAP

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.