CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002429_P003	Maize	nucleus	84.39	88.86
Zm00001d026240_P006	Maize	plastid	89.68	85.39
TraesCS6B01G296900.1	Wheat	plastid	62.43	58.13
TraesCS6A01G269600.1	Wheat	nucleus	62.17	57.6
TraesCS6D01G245300.1	Wheat	plastid	61.9	57.21
HORVU6Hr1G068370.1	Barley	nucleus	55.82	54.1
OQU85555	Sorghum	plastid	60.05	51.95
HORVU0Hr1G016610.1	Barley	plastid	51.85	47.0
HORVU0Hr1G016590.2	Barley	cytosol, nucleus	25.66	45.75
EER89089	Sorghum	cytosol, mitochondrion, nucleus	34.39	40.75
OQU76020	Sorghum	mitochondrion, nucleus	28.84	32.25
KXG31209	Sorghum	mitochondrion, nucleus	31.48	30.05
EER99361	Sorghum	nucleus	16.4	22.88
KXG28671	Sorghum	nucleus	19.84	20.22
EER93679	Sorghum	nucleus	21.96	19.08
EER90936	Sorghum	nucleus	27.51	17.3

Protein Annotations

MapMan:15.5.52.1	EntrezGene:8072276	UniProt:C5YF61	EnsemblPlants:EES12787	ProteinID:EES12787	ProteinID:EES12787.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ
InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF21	SMART:SM00951	EnsemblPlantsGene:SORBI_3006G203400	UniParc:UPI0001A8749C	InterPro:WRC_dom
RefSeq:XP_002448459.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:55407501..55411315

Molecular Weight (calculated)

41033.1 Da

IEP (calculated)

8.574

GRAVY (calculated)

-0.604

Length

378 amino acids

Sequence
(BLAST)

001: MAMPFASLSP AADHRPSSLL PFCRAAPLSA VGEDAAQHHQ QQQQQHTMSG RWAARPALFT AAQYEELEHQ ALIYKYLVAG VPVPPDLLVP LRRGFVYHQP
101: ALGYGTYFGK KVDPEPGRCR RTDGKKWRCS KEAAPDSKYC ERHMHRGRNR SRKPVEAPLV PPPHAPQQQQ QQQQPPPAPV AGFQNHSLYP SVLAGNGGVG
201: VGGGGGGTFG MGPTSQLHMD SAAAYATAAG GGSKDLRYSA YGAKSLSDDH SQLLPGGMDP SMDNSWRLLP SQTTTFQATS YPVFGTLSGL DESTIASLPK
301: TQREPLSFFG SDYVTAKQEN QTLRPFFDEW PKSRESWPEL AEDNHLGFSA TQLSISIPMA TSDFSNTSSR SPNGIPSR

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.