Factsheet for HORVU6Hr1G068370.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G026650.1	Barley	mitochondrion, nucleus	28.46	97.37
HORVU0Hr1G016610.1	Barley	plastid	90.26	84.41
TraesCS6B01G296900.1	Wheat	plastid	80.51	77.34
TraesCS6A01G269600.1	Wheat	nucleus	80.77	77.21
TraesCS6D01G245300.1	Wheat	plastid	80.77	77.02
HORVU0Hr1G016590.2	Barley	cytosol, nucleus	41.28	75.94
Zm00001d002429_P003	Maize	nucleus	51.79	56.27
EES12787	Sorghum	nucleus	54.1	55.82
Zm00001d026240_P006	Maize	plastid	53.85	52.9
HORVU7Hr1G008680.11	Barley	cytosol, mitochondrion, nucleus, vacuole	32.31	31.58
HORVU7Hr1G034610.4	Barley	mitochondrion	25.13	31.31
HORVU6Hr1G065740.4	Barley	nucleus	15.38	28.17
HORVU2Hr1G094460.2	Barley	mitochondrion, plasma membrane	15.9	27.68
HORVU6Hr1G081210.1	Barley	nucleus	27.95	26.39
HORVU2Hr1G094470.2	Barley	nucleus	16.41	25.3
HORVU4Hr1G037480.5	Barley	nucleus	17.95	21.34
HORVU2Hr1G054270.3	Barley	plastid	15.64	20.33
HORVU4Hr1G003440.12	Barley	nucleus	20.51	19.61
HORVU6Hr1G035720.1	Barley	cytosol, mitochondrion, nucleus	14.62	18.15
HORVU4Hr1G010080.2	Barley	nucleus	26.41	16.91

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A287UJ13	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	EnsemblPlantsGene:HORVU6Hr1G068370	EnsemblPlants:HORVU6Hr1G068370.1	InterPro:IPR014977	InterPro:IPR014978
PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF21
SMART:SM00951	UniParc:UPI000B47B482	InterPro:WRC_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr6H:+:473135773..473139348

Molecular Weight (calculated)

42191.2 Da

IEP (calculated)

8.540

GRAVY (calculated)

-0.587

Length

390 amino acids

Sequence
(BLAST)

001: MAMPYASLSP ARDRRSSPAA TATATASRLP FCRYYPFSAG NGAGEKARAD GGWLARPVPF TAAQYKELEH QALIYKYLVA GVPVPSNLVH PIRRGVEDLA
101: ARVYHNYLGI RSELFRGKKV DPEPGRCRRT DGKKWRCAKE AFSDSKYCER HMHRGRNRSR KPVETQLVPH SQPPPAASAV PPLATGFQSH SLYPAIGGGG
201: GGGNSMSSTF SSALGPPQPH MAPYAALGGG GTCKDFRYTA YGVGSLADEH SKLITEAINT SMESPWCLPP SSETTTFPLP SYPPQLGATS ELGQNNNSNS
301: NSNAAKAERQ QQQPLGDFDS GAINPMEQDN QTLRPFFDEW PKARDSWSDL TDDNSSLASF SATQLSMSIP DFSVASSQSP NSMLFAGEMY

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.