Factsheet for HORVU4Hr1G010080.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G010610.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	HORVU4Hr1G010610.1	AT5G28640.1	15326298
AT4G37740.1	HORVU4Hr1G010610.1	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G059600.1	Wheat	nucleus	89.0	93.77
TraesCS4B01G060000.1	Wheat	nucleus	93.27	92.96
TraesCS4A01G255000.1	Wheat	nucleus	92.28	92.59
Os03t0729500-01	Rice	nucleus	60.1	80.26
EER90936	Sorghum	nucleus	72.91	73.88
Zm00001d033876_P004	Maize	nucleus	70.61	72.51
Zm00001d013346_P001	Maize	nucleus	63.55	66.15
GSMUA_Achr3P15140_001	Banana	nucleus	38.59	48.16
GSMUA_Achr7P27480_001	Banana	nucleus	45.98	46.13
GSMUA_Achr8P04970_001	Banana	nucleus	44.01	46.13
GSMUA_Achr1P27000_001	Banana	nucleus	31.69	45.52
HORVU4Hr1G037480.5	Barley	nucleus	24.47	45.43
CDY55116	Canola	nucleus	20.36	43.97
VIT_18s0001g08650.t01	Wine grape	nucleus	42.53	42.88
CDY66422	Canola	nucleus	20.85	40.58
CDX83200	Canola	nucleus	26.11	40.36
KRG88739	Soybean	nucleus	38.26	39.23
KRH05542	Soybean	nucleus	37.93	38.5
KRG88736	Soybean	nucleus	37.77	38.4
KRH05543	Soybean	nucleus	37.93	37.93
GSMUA_AchrUn_...	Banana	nucleus	21.18	37.83
Bra000575.1-P	Field mustard	nucleus	30.87	36.29
CDX72654	Canola	nucleus	26.27	36.2
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	35.47	36.18
CDX75672	Canola	nucleus	26.6	35.92
AT2G22840.1	Thale cress	nucleus	31.2	35.85
CDX69322	Canola	nucleus	27.09	35.79
Bra011781.1-P	Field mustard	nucleus	26.44	35.7
Solyc04g077510.2.1	Tomato	nucleus	34.81	35.63
Bra017851.1-P	Field mustard	nucleus	25.94	35.35
CDY29584	Canola	nucleus	23.65	35.29
AT4G37740.1	Thale cress	nucleus	29.56	33.64
HORVU6Hr1G065740.4	Barley	nucleus	11.49	32.86
HORVU2Hr1G094460.2	Barley	mitochondrion, plasma membrane	11.33	30.8
HORVU7Hr1G034610.4	Barley	mitochondrion	15.11	29.39
HORVU2Hr1G094470.2	Barley	nucleus	11.99	28.85
HORVU4Hr1G003440.12	Barley	nucleus	18.72	27.94
HORVU7Hr1G008680.11	Barley	cytosol, mitochondrion, nucleus, vacuole	18.06	27.57
CDY21475	Canola	nucleus	21.84	26.76
HORVU6Hr1G068370.1	Barley	nucleus	16.91	26.41
HORVU0Hr1G016610.1	Barley	plastid	16.42	23.98
HORVU6Hr1G081210.1	Barley	nucleus	16.26	23.97
HORVU0Hr1G016590.2	Barley	cytosol, nucleus	8.21	23.58
HORVU6Hr1G035720.1	Barley	cytosol, mitochondrion, nucleus	11.82	22.93
HORVU0Hr1G026650.1	Barley	mitochondrion, nucleus	3.78	20.18
GSMUA_Achr8P26530_001	Banana	nucleus	45.32	19.25
HORVU2Hr1G054270.3	Barley	plastid	9.36	19.0

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A287N5R0	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	EnsemblPlantsGene:HORVU4Hr1G010080	EnsemblPlants:HORVU4Hr1G010080.2	InterPro:IPR014977	InterPro:IPR014978
PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF40
SMART:SM00951	UniParc:UPI000B464DBC	InterPro:WRC_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr4H:+:29847231..29851800

Molecular Weight (calculated)

64431.3 Da

IEP (calculated)

7.149

GRAVY (calculated)

-0.428

Length

609 amino acids

Sequence
(BLAST)

001: MDLGGVLMAA AEAGVGGGEL GMLGSRLLKH GRANAAAEAD EHGWGLGVRP AAKQARAAAS AGDSDAVSEA VRAAAPYLLG TCSPGHGREK MLSFSSSHSQ
101: PPSCPSAAAA QAALPLYYGT PASCSGLSSV SLSASIQGAM ARVRGPFTPS QWMELEHQAL IYKYLAANIP VPHNLLVPIR RSVTSLYPSA YFGSSTLGWG
201: PFQLGYSGNA DLEPGRCRRT DGKKWRCSRD AVADQKYCER HMNRGRHRSR KHVEGQPGHA AKAMPATVAA AAQPGALAAG GCGGATAGAA IGHEQQPMKS
301: YAANAIDPCS LQYNSREMVS KQQQECEQVQ DSDSLSMLTS MSARNTAGSM FPFSKEHHNH NHNHNHNPFE VTSSRPDYGL VSSDSLMTSS PHSSLENVNL
401: LTSQRALSNE QQSSLSLQHF ADWPRTPSQQ GHGGALSWPD AEDMQQAHQR TQLSISAPMA SSDLSSASTS PIHEKLMLSP LKLSREYSPI GLSIAATAAA
501: KEDEGEANWM PLFRDSAMGG PLGEALNKNN GGNMEAKNYL SASLNLMTDA WDSSPLESSP VGVLQRTAFG SVSSSTGSSP RQEYHGVYDG VPRDDLGSIV
601: VNHPSIRLM

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.