CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90925

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	EER90925	AT5G28640.1	15326298
AT4G37740.1	EER90925	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033876_P004	Maize	nucleus	90.52	91.74
Os03t0729500-01	Rice	nucleus	61.73	81.36
Zm00001d013346_P001	Maize	nucleus	77.2	79.32
TraesCS4D01G059600.1	Wheat	nucleus	70.72	73.53
TraesCS4A01G255000.1	Wheat	nucleus	74.21	73.48
TraesCS4B01G060000.1	Wheat	nucleus	74.21	73.0
HORVU4Hr1G010080.2	Barley	nucleus	73.88	72.91
GSMUA_Achr3P15140_001	Banana	nucleus	39.77	48.98
GSMUA_Achr7P27480_001	Banana	nucleus	47.92	47.45
GSMUA_Achr8P04970_001	Banana	nucleus	45.76	47.33
CDY55116	Canola	nucleus	21.96	46.81
GSMUA_Achr1P27000_001	Banana	nucleus	32.45	45.99
KXG28671	Sorghum	nucleus	28.12	45.55
CDY66422	Canola	nucleus	22.46	43.13
VIT_18s0001g08650.t01	Wine grape	nucleus	42.43	42.22
CDX83200	Canola	nucleus	27.45	41.88
KRG88739	Soybean	nucleus	38.77	39.23
KRH05542	Soybean	nucleus	39.1	39.17
CDX72654	Canola	nucleus	28.79	39.14
CDY29584	Canola	nucleus	26.12	38.48
GSMUA_AchrUn_...	Banana	nucleus	21.8	38.42
Bra000575.1-P	Field mustard	nucleus	32.95	38.22
KRH05543	Soybean	nucleus	38.6	38.1
KRG88736	Soybean	nucleus	37.94	38.06
Bra017851.1-P	Field mustard	nucleus	28.29	38.03
CDX75672	Canola	nucleus	28.12	37.47
CDX69322	Canola	nucleus	28.62	37.31
Bra011781.1-P	Field mustard	nucleus	27.95	37.25
Solyc04g077510.2.1	Tomato	nucleus	36.77	37.14
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	36.44	36.68
AT2G22840.1	Thale cress	nucleus	32.28	36.6
AT4G37740.1	Thale cress	nucleus	31.11	34.95
CDY21475	Canola	nucleus	23.96	28.97
EER93679	Sorghum	nucleus	20.47	28.28
OQU76020	Sorghum	mitochondrion, nucleus	15.81	28.11
EES12787	Sorghum	nucleus	17.3	27.51
KXG31209	Sorghum	mitochondrion, nucleus	17.47	26.52
OQU85555	Sorghum	plastid	18.8	25.86
EER89089	Sorghum	cytosol, mitochondrion, nucleus	12.98	24.45
EER99361	Sorghum	nucleus	9.65	21.4
GSMUA_Achr8P26530_001	Banana	nucleus	47.42	19.87

Protein Annotations

MapMan:15.5.52.1	UniProt:C5WLZ4	EnsemblPlants:EER90936	ProteinID:EER90936	ProteinID:EER90936.2	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977
InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF40	SMART:SM00951	EnsemblPlantsGene:SORBI_3001G104500	unigene:Sbi.5724	UniParc:UPI0003C6A32B	InterPro:WRC_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:8001993..8006115

Molecular Weight (calculated)

62488.0 Da

IEP (calculated)

6.982

GRAVY (calculated)

-0.292

Length

601 amino acids

Sequence
(BLAST)

001: MDLMGGVVMD AGGGGAAELG LLGGGGSSSR LLKHGRGNAA AGGEDHGWGG GVGGGRAKQA RTATASVVAG DVVEAAKAAA APFLLGSCSP GHGGEQMLSF
101: SSATAAASSC ASTAAVAAAV AADGGAMPLY YGTPASCSGL SSVSLSTSMQ GAMARVRGPF TPSQWIELEH QALIYKYLAA NSPIPHSLLI PIRRSLASSP
201: YPPSYFGTST LGWGSFQLGY SGNADLEPGR CRRTDGKKWR CSRDAVADQK YCERHMNRGR HRSRKHVEGQ PGHAAKAMSA VVAAAATQPA ALAGAGATAA
301: GLTVNQHQQP AKSYATGAAD PCSLQYNREL VNKQNESENM QDSDNLSMLT SMTTGNTGSV FPFSKQNNPF EVTSSRPEFG LVSSDSLMSS PHSSLENVNL
401: LSSQSLNEHQ SSATLQHFVD WPRTPAQGGL SWPEAEDMQA QRSQLSISAP MASSELSSAS TSPIHEKLML SPLKLSREYS PTGLSIAANR DEVSQLEATW
501: ATMFRDSSMG GPLGEVLNKN GNVEAKNCLS APLNLLTDYW DSSHGMESSP VGVLQKTTFG SVSSSTGSSP RIENHGAYDG ISNLRDDLGS IVVSHPSIRF
601: V

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.